PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016466595.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NF-YA | ||||||||
Protein Properties | Length: 314aa MW: 34842 Da PI: 9.5862 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 104.1 | 1.2e-32 | 185 | 241 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++Il+RRq+Rakle+++kl k+rkpylheSRh hA++R RgsgGrF XP_016466595.1 185 DGPVYVNAKQYHGILRRRQMRAKLEAQNKL-VKARKPYLHESRHLHAVKRVRGSGGRF 241 57****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 7.1E-37 | 183 | 244 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.033 | 184 | 244 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.5E-27 | 187 | 241 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 9.3E-24 | 187 | 209 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 189 | 209 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 9.3E-24 | 218 | 241 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MAVRAQALPN RSLEQTSTCF VPHFAVNSST WWSSNEVQSS QFLPKNLTSE VVFQPPPCQQ 60 MKPLGLGLQG DDSYSTQSNS NSPLEVTALG KTGSQDQCAS SGSVHDESYK RNKQAQIKTN 120 PFIRYPEYPT DCSQSEMAHS ISHAPFGYSD PYLSGFYAAY GPHVFPQMIS IAPARVPLPL 180 DLAEDGPVYV NAKQYHGILR RRQMRAKLEA QNKLVKARKP YLHESRHLHA VKRVRGSGGR 240 FLSTKKLQES IPNDLNSSQD LVTREAHTSA FLSVRQDAAH NSVIFQQQQH DHRASSLSSH 300 MAVSMQSSRS TGIS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 1e-20 | 187 | 245 | 4 | 62 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016466595.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-4-like isoform X2 | ||||
TrEMBL | A0A1S3ZPY7 | 0.0 | A0A1S3ZPY7_TOBAC; nuclear transcription factor Y subunit A-4-like isoform X2 | ||||
STRING | XP_009801470.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72830.1 | 4e-45 | nuclear factor Y, subunit A3 |