PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016466457.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 132aa MW: 14935.2 Da PI: 4.4211 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.1 | 3.1e-13 | 33 | 106 | 16 | 96 |
EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 16 lvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 + lp k + e g ++ ++ + sg++W++ + ++ +r +++GWk+Fv++n+Lk gD +vF+l + s++++++kv XP_016466457.1 33 MFLPAKICPELtpG-----EV-PVVLTCSGKKWDMCC--SGDYRR-RFKQGWKNFVNDNNLKIGDGLVFELLQCSRAKMTFKV 106 66666666555322.....22.2456679********..444444.4899********************7754555555544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.6E-15 | 15 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.71E-16 | 15 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.01E-16 | 16 | 110 | No hit | No description |
SMART | SM01019 | 0.0033 | 17 | 112 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.125 | 18 | 112 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-11 | 32 | 106 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
MADSEDEDIS PLCGKPYFDF ILGESNLEPK YMMFLPAKIC PELTPGEVPV VLTCSGKKWD 60 MCCSGDYRRR FKQGWKNFVN DNNLKIGDGL VFELLQCSRA KMTFKVQILR GDFPAELMTE 120 PEDGTAENPI VL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018630850.1 | 7e-95 | PREDICTED: B3 domain-containing protein Os04g0386900-like | ||||
TrEMBL | A0A1S3ZQ22 | 4e-93 | A0A1S3ZQ22_TOBAC; B3 domain-containing protein Os04g0386900-like | ||||
STRING | XP_009617043.1 | 2e-94 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1819 | 21 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 9e-08 | related to vernalization1 1 |