PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016466224.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 464aa MW: 50902.8 Da PI: 6.097

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016466224.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123	9.7e-39	113	171	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++k+l+cprC+s++tkfCy+nny++sqPr+fCk+C+ryWt+GG++rnvPvG+grrk+k+ XP_016466224.1 113 PDKILPCPRCNSMETKFCYFNNYNVSQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKHKN 171 7899****************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-29	110	170	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.2E-32	115	171	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.584	117	171	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	119	155	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence Send to blast
MSGSIANKDP AIKLFGRTIQ LPDFPAPSPA DTGDYSSSAG EAELEHKGQC DDCKDENEHL 60 IAEELQGQNP IPEKSDIIEE SPSYNDCSTA KTSKSEEEQA ETSNSQEKIL KKPDKILPCP 120 RCNSMETKFC YFNNYNVSQP RHFCKNCQRY WTAGGTMRNV PVGAGRRKHK NPVLHYRHIS 180 VSETLTDLSN GIQPPPLKLN GTILAFDTDK PLRESMGSVL NIADKTMQNC SGNGFHRYKE 240 LGIQAGDNGD DRSNGSSVTA LSSKDSDNGL PDMPRQNCDS FSPHLPCFTG APWPYPWSSV 300 HLSNAVPPPG YYLPGFPMPF VPAYWGCAIP GSWNVPWMSP PTASQNQMPP TSSPNSPTLG 360 KHPRDEIILK SMGSEEEPWK ESNPPEKCLW FPKTLRIGDP GEAAKSSIWS TLGIKHDVVD 420 SVSGGSFKAF LPKSDERNHV SENSSVLKAN PAAMSRSLNF NESS

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence Send to blast

MSGSIANKDP AIKLFGRTIQ LPDFPAPSPA DTGDYSSSAG EAELEHKGQC DDCKDENEHL  60
IAEELQGQNP IPEKSDIIEE SPSYNDCSTA KTSKSEEEQA ETSNSQEKIL KKPDKILPCP  120
RCNSMETKFC YFNNYNVSQP RHFCKNCQRY WTAGGTMRNV PVGAGRRKHK NPVLHYRHIS  180
VSETLTDLSN GIQPPPLKLN GTILAFDTDK PLRESMGSVL NIADKTMQNC SGNGFHRYKE  240
LGIQAGDNGD DRSNGSSVTA LSSKDSDNGL PDMPRQNCDS FSPHLPCFTG APWPYPWSSV  300
HLSNAVPPPG YYLPGFPMPF VPAYWGCAIP GSWNVPWMSP PTASQNQMPP TSSPNSPTLG  360
KHPRDEIILK SMGSEEEPWK ESNPPEKCLW FPKTLRIGDP GEAAKSSIWS TLGIKHDVVD  420
SVSGGSFKAF LPKSDERNHV SENSSVLKAN PAAMSRSLNF NESS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016466224.1	0.0	PREDICTED: cyclic dof factor 3-like
TrEMBL	A0A1S3ZPI9	0.0	A0A1S3ZPI9_TOBAC; cyclic dof factor 3-like
STRING	XP_009792864.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	6e-95	cycling DOF factor 2