PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016466199.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | G2-like | ||||||||
Protein Properties | Length: 192aa MW: 21852.5 Da PI: 6.5102 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 99.1 | 3.1e-31 | 27 | 79 | 2 | 54 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 prlrWtpeLH+ F+eave+LGGs+kAtPk+i ++m vkgL ++hvkSHLQ+YR XP_016466199.1 27 PRLRWTPELHQLFIEAVEHLGGSDKATPKRIQQMMAVKGLKISHVKSHLQMYR 79 8**************************************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.866 | 23 | 83 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-28 | 24 | 81 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.1E-24 | 27 | 80 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 4.26E-16 | 27 | 83 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-9 | 28 | 79 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MMEFSIMKNS SSQKISRVRQ YKKSSVPRLR WTPELHQLFI EAVEHLGGSD KATPKRIQQM 60 MAVKGLKISH VKSHLQMYRN LKERASTTIV RSSSPDQQIE AGTQLSYKAG VNGYSDQIAE 120 NVHCYDYQEA QGSLSSGMTK EEEGEISEFP QADGECEREI NFWPLNDYEN SQSIKDSSHI 180 NLDLSISSCF YC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 5e-19 | 28 | 84 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 5e-19 | 28 | 84 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 5e-19 | 28 | 84 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 5e-19 | 28 | 84 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 5e-19 | 28 | 84 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 5e-19 | 28 | 84 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 5e-19 | 28 | 84 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 5e-19 | 28 | 84 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016466199.1 | 1e-143 | PREDICTED: transcription repressor KAN1-like | ||||
TrEMBL | A0A1S3ZPH0 | 1e-142 | A0A1S3ZPH0_TOBAC; transcription repressor KAN1-like | ||||
STRING | XP_009785228.1 | 1e-140 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9459 | 13 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 2e-27 | G2-like family protein |