PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016466116.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 366aa    MW: 41423.6 Da    PI: 7.3243
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016466116.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.54.2e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+ ++ q+G+g +W + + ++g++R++k+c++rw++yl
   XP_016466116.1 14 KGPWSPEEDAKLKSYIDQHGTGgSWIALPPKIGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding36.31.3e-1169111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +++eEd++++ +    G++ W+ Ia+ ++ gRt++++k++w++
   XP_016466116.1  69 GGFSQEEDDIILSLSISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.654962IPR017930Myb domain
SuperFamilySSF466895.31E-2511109IPR009057Homeodomain-like
SMARTSM007175.1E-111364IPR001005SANT/Myb domain
PfamPF002493.7E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-231569IPR009057Homeodomain-like
CDDcd001671.01E-71662No hitNo description
PROSITE profilePS5129420.68363117IPR017930Myb domain
SMARTSM007172.6E-1167115IPR001005SANT/Myb domain
PfamPF002493.1E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2270117IPR009057Homeodomain-like
CDDcd001673.25E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MGRAPCCDKN SVKKGPWSPE EDAKLKSYID QHGTGGSWIA LPPKIGLKRC GKSCRLRWLN  60
YLRPNLKHGG FSQEEDDIIL SLSISIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLFGK  120
QRKNLRGKSQ KQGSRKGRDQ MNSSMDSHNN IDTNPSWSEF PILQPIPYSN DEPRYNNDHT  180
SIRKLLMKLG GNFYEDDDKP MNGALNPQYD PMDNSLMHPV YHNSINLISS APMVVMNTSP  240
FTNSHEYNVD GKAVCWVDTD AEKRKLGERM GSDTSVARAL NDGCNSTTEL EHMVYTNPQK  300
LDDLEMLYED MLNNKPATTL GGSLHWEDMN NLVFPFPPLV VSNNEGHQHG TLLEEGALNE  360
PRYPRD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-22141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016466116.10.0PREDICTED: transcription factor RAX1-like
TrEMBLA0A1S3ZP040.0A0A1S3ZP04_TOBAC; transcription factor RAX1-like
STRINGXP_009785472.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.15e-57myb domain protein 36