PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016465992.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | G2-like | ||||||||
Protein Properties | Length: 108aa MW: 12442 Da PI: 6.6847 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 91.8 | 5.8e-29 | 27 | 81 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr rWt e H++Fveav++LGG+ +AtPk+i++lm+ +++t +h+kSHLQkYR XP_016465992.1 27 KPRFRWTVEVHDHFVEAVNELGGPFEATPKNIMKLMDDEDITSDHIKSHLQKYRQ 81 79****************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.61E-15 | 26 | 82 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-26 | 26 | 82 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.6E-23 | 27 | 82 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.3E-6 | 31 | 80 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 108 aa Download sequence Send to blast |
MEGSSKEQKS EETSEKAVVP SHDLNRKPRF RWTVEVHDHF VEAVNELGGP FEATPKNIMK 60 LMDDEDITSD HIKSHLQKYR QSKDIISTPN TSKGKFLITY SITIYGQY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 7e-19 | 27 | 83 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 7e-19 | 27 | 83 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 7e-19 | 27 | 83 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 7e-19 | 27 | 83 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 7e-19 | 27 | 83 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 7e-19 | 27 | 83 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 7e-19 | 27 | 83 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 7e-19 | 27 | 83 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016465992.1 | 3e-76 | PREDICTED: probable transcription factor KAN3 | ||||
Swissprot | Q9SQQ9 | 2e-18 | PHL9_ARATH; Myb-related protein 2 | ||||
TrEMBL | A0A1S3ZNQ9 | 7e-75 | A0A1S3ZNQ9_TOBAC; probable transcription factor KAN3 | ||||
STRING | XP_009765181.1 | 2e-63 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12062 | 16 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18240.3 | 4e-20 | myb-related protein 1 |
Publications ? help Back to Top | |||
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