PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016465935.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 245aa MW: 27455.3 Da PI: 9.9824 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37 | 5.9e-12 | 69 | 120 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ +hn+ Er RR++ Ns + Lr+llP + + kK s ++ ++++YI +L XP_016465935.1 69 KKLNHNASERDRRKKFNSLCSSLRSLLPAtD---HTKKISFPVTVARVIKYIPDL 120 6789*************************55...7777**************988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.824 | 68 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-10 | 69 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.37E-13 | 69 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.4E-9 | 69 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.8E-6 | 74 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 245 aa Download sequence Send to blast |
MMAVSSPLFS NFGVCLADPK NKKLNTIEAP LSTGIPVHYS SSQPSIVHSE FKNFEEINGD 60 NDHLDGTVKK LNHNASERDR RKKFNSLCSS LRSLLPATDH TKKISFPVTV ARVIKYIPDL 120 KKEVGGLTQK KEDLTLRSIP KKEYSADFNN KQTIIKGGIQ SSLSVISANQ VGNREVIIHI 180 SILKTNKSSF AEAVSELEEE GLLLLNASSF ETLGDRVFYN LHFQAGHYIS RHPSRREAKW 240 MRPFT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009774484.1 | 0.0 | PREDICTED: transcription factor bHLH100-like isoform X2 | ||||
Refseq | XP_016465935.1 | 0.0 | PREDICTED: transcription factor bHLH100-like isoform X2 | ||||
TrEMBL | A0A1S3ZN20 | 0.0 | A0A1S3ZN20_TOBAC; transcription factor bHLH100-like isoform X2 | ||||
TrEMBL | A0A1U7WIK5 | 0.0 | A0A1U7WIK5_NICSY; transcription factor bHLH100-like isoform X2 | ||||
STRING | XP_009774483.1 | 1e-162 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G56970.1 | 2e-32 | bHLH family protein |