PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016465777.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 417aa    MW: 47591.4 Da    PI: 4.5192
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016465777.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-1771128255
             AP2   2 gykGVrwdkkrgrWvAeIrd.pseng..kr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr++  +g+WvAeIr+ +++ g  k+  kr +lg+f t  +Aa a+++a+k ++g
  XP_016465777.1  71 IYRGVRQRI-WGKWVAEIREpVYNSGqyKTsgKRLWLGTFSTSVDAALAYDEAAKVMYG 128
                     69****998.**********666666785578***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-1270128IPR001471AP2/ERF domain
CDDcd000182.02E-2870137No hitNo description
PROSITE profilePS5103221.62871136IPR001471AP2/ERF domain
SMARTSM003802.0E-3271142IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-1871137IPR016177DNA-binding domain
PRINTSPR003671.1E-87283IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-2772137IPR001471AP2/ERF domain
PRINTSPR003671.1E-8102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MSSHILQRKQ KRRRNGCDSL EEILLKWKNH YEELNSSTED VQVKKKRKIP VKRSRKGCMR  60
GKGGPENSGC IYRGVRQRIW GKWVAEIREP VYNSGQYKTS GKRLWLGTFS TSVDAALAYD  120
EAAKVMYGSN AILNFPNYCV QNDSSSIVNI ARTSSLESTD QSSVDHEDSG AEDTKIRVDQ  180
STFATSVVTA DEKQHSSCCC LTEKSGVMLE EDYENELNDS GCSSRTDSKS PSCCVKVETL  240
IKEEIEKDGF VHDKDLERLN SYEVSNSLHI TNEETTDVKP QDLNILQEQP LDFRSTENPS  300
EDFCRRLEYM EHWLMEDDSS TEATKVTGTF CLAENHNEEF QKFLEESFDF KPMIVPQDSA  360
ELNNVKNEEQ FDCTYNQQID QQTDGIISNQ ADTNSSISWQ PEDSIKDLSV FNFDFDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-2072136360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-1972136663ATERF1
3gcc_A1e-1972136663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1613QRKQKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009597142.10.0PREDICTED: dehydration-responsive element-binding protein 2C-like
RefseqXP_016465777.10.0PREDICTED: dehydration-responsive element-binding protein 2C-like
TrEMBLA0A1S3ZN410.0A0A1S3ZN41_TOBAC; dehydration-responsive element-binding protein 2C-like
STRINGXP_009597142.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA79651530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.17e-43ERF family protein