PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016465777.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 417aa MW: 47591.4 Da PI: 4.5192 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.6 | 1.3e-17 | 71 | 128 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.pseng..kr..krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+WvAeIr+ +++ g k+ kr +lg+f t +Aa a+++a+k ++g XP_016465777.1 71 IYRGVRQRI-WGKWVAEIREpVYNSGqyKTsgKRLWLGTFSTSVDAALAYDEAAKVMYG 128 69****998.**********666666785578***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.1E-12 | 70 | 128 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.02E-28 | 70 | 137 | No hit | No description |
PROSITE profile | PS51032 | 21.628 | 71 | 136 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-32 | 71 | 142 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.42E-18 | 71 | 137 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.1E-8 | 72 | 83 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-27 | 72 | 137 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-8 | 102 | 118 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MSSHILQRKQ KRRRNGCDSL EEILLKWKNH YEELNSSTED VQVKKKRKIP VKRSRKGCMR 60 GKGGPENSGC IYRGVRQRIW GKWVAEIREP VYNSGQYKTS GKRLWLGTFS TSVDAALAYD 120 EAAKVMYGSN AILNFPNYCV QNDSSSIVNI ARTSSLESTD QSSVDHEDSG AEDTKIRVDQ 180 STFATSVVTA DEKQHSSCCC LTEKSGVMLE EDYENELNDS GCSSRTDSKS PSCCVKVETL 240 IKEEIEKDGF VHDKDLERLN SYEVSNSLHI TNEETTDVKP QDLNILQEQP LDFRSTENPS 300 EDFCRRLEYM EHWLMEDDSS TEATKVTGTF CLAENHNEEF QKFLEESFDF KPMIVPQDSA 360 ELNNVKNEEQ FDCTYNQQID QQTDGIISNQ ADTNSSISWQ PEDSIKDLSV FNFDFDI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 8e-20 | 72 | 136 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 1e-19 | 72 | 136 | 6 | 63 | ATERF1 |
3gcc_A | 1e-19 | 72 | 136 | 6 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 6 | 13 | QRKQKRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009597142.1 | 0.0 | PREDICTED: dehydration-responsive element-binding protein 2C-like | ||||
Refseq | XP_016465777.1 | 0.0 | PREDICTED: dehydration-responsive element-binding protein 2C-like | ||||
TrEMBL | A0A1S3ZN41 | 0.0 | A0A1S3ZN41_TOBAC; dehydration-responsive element-binding protein 2C-like | ||||
STRING | XP_009597142.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7965 | 15 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40340.1 | 7e-43 | ERF family protein |