PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016465679.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MIKC_MADS

Protein Properties

Length: 341aa MW: 39057.9 Da PI: 5.4498

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016465679.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	89.1	2.3e-28	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k+ien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g++ ++s XP_016465679.1 9 KKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRISTFS 58 68***********************************************8 PP
2	K-box	17.3	2e-07	106	171	5	71
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne 71 s +++ e+ qqe+ k k ++e + r +R + G+ e ++ e q e+ L++ lk++ ++K+ XP_016465679.1 106 SPA-SVDSQIEEFQQEILKYKTQLEDMDRRLRMYEGDLCEITTVCEAQYREEILQETLKQVQARKHV 171 444.4677899*****************************************************974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	29.885	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.1E-37	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.35E-30	2	82	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.63E-38	2	75	No hit	No description
PRINTS	PR00404	1.1E-25	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.3E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-25	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-25	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MGRVKLQIKK IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRISTFSGN 60 KSIEDIMARY VNLPEHDRGR LHNQEHLQRA IAKLKCETDR TYQAASPASV DSQIEEFQQE 120 ILKYKTQLED MDRRLRMYEG DLCEITTVCE AQYREEILQE TLKQVQARKH VLEETYSSPQ 180 RQTAPQPQMD FASQNVNVVN NVATSDSIPN TSSNTFMDWV PRSQRDPHVQ ILNFLDSNGL 240 LPFRDEADQR MENMLPPSLT QLHTPNVSAV VTDHLSPPNN RFENDPPRPT SSFEGIIDVN 300 NAPWPPLYPT GNDPFPEAQP RERALLELFL SQLTPVNQDH L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	1e-15	1	89	1	90	Myocyte-specific enhancer factor 2B
1tqe_Q	1e-15	1	89	1	90	Myocyte-specific enhancer factor 2B
1tqe_R	1e-15	1	89	1	90	Myocyte-specific enhancer factor 2B
1tqe_S	1e-15	1	89	1	90	Myocyte-specific enhancer factor 2B
3mu6_A	8e-16	2	70	1	68	Myocyte-specific enhancer factor 2A
3mu6_B	8e-16	2	70	1	68	Myocyte-specific enhancer factor 2A
3mu6_C	8e-16	2	70	1	68	Myocyte-specific enhancer factor 2A
3mu6_D	8e-16	2	70	1	68	Myocyte-specific enhancer factor 2A
6bz1_A	1e-15	1	80	1	79	MEF2 CHIMERA
6bz1_B	1e-15	1	80	1	79	MEF2 CHIMERA
6bz1_C	1e-15	1	80	1	79	MEF2 CHIMERA
6bz1_D	1e-15	1	80	1	79	MEF2 CHIMERA
6c9l_A	1e-15	1	89	1	90	Myocyte-specific enhancer factor 2B
6c9l_B	1e-15	1	89	1	90	Myocyte-specific enhancer factor 2B
6c9l_C	1e-15	1	89	1	90	Myocyte-specific enhancer factor 2B
6c9l_D	1e-15	1	89	1	90	Myocyte-specific enhancer factor 2B
6c9l_E	1e-15	1	89	1	90	Myocyte-specific enhancer factor 2B
6c9l_F	1e-15	1	89	1	90	Myocyte-specific enhancer factor 2B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	3e-74	HG975443.1 Solanum pennellii chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009629661.1	0.0	PREDICTED: agamous-like MADS-box protein AGL66 isoform X2
Refseq	XP_016465679.1	0.0	PREDICTED: agamous-like MADS-box protein AGL66 isoform X2
Swissprot	Q9LM46	1e-52	AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBL	A0A1S3ZN05	0.0	A0A1S3ZN05_TOBAC; agamous-like MADS-box protein AGL66 isoform X2
STRING	XP_009629660.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	5e-55	AGAMOUS-like 104

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]