PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016465399.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 835aa    MW: 90920.9 Da    PI: 6.0851
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016465399.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.85.9e-21132187156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++eLe+lF+++++p++++r eL+k+l+L++rqVk+WFqNrR+++k
  XP_016465399.1 132 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLSLETRQVKFWFQNRRTQMK 187
                     688999***********************************************999 PP
2START2015.1e-633395641206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela++a++elvk+a+ +ep+W++s+    e++n +e++++f++  +       +ea+r++g+v+ ++  lve+l+d++ +W e+++    + +t+
  XP_016465399.1 339 ELALAAMDELVKMAQTDEPLWFRSVeggrEILNHEEYMRSFTPCIGmrpnsLVSEASRETGMVIINSLALVETLMDSN-KWAEMFPcliaRTSTT 432
                     5899***************************************999****9***************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwveh 169
                     +vissg      galqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d  ++ ++  + +  ++ lpSg+l+++++ng+skvtwveh
  XP_016465399.1 433 DVISSGmggtrnGALQLMHAELQVLSPLVPiREVNFLRFCKQHAEGVWAVVDVSIDTIRETSSnAPTFPNSRILPSGCLVQDMPNGYSKVTWVEH 527
                     *********************************************************999999999***************************** PP

                     EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      +++++++h l+r+l++ g+ +ga++wvatlqrqce+
  XP_016465399.1 528 GEYDESVIHHLYRPLISAGMGFGAQRWVATLQRQCEC 564
                     ***********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-21118183IPR009057Homeodomain-like
SuperFamilySSF466891.5E-20118189IPR009057Homeodomain-like
PROSITE profilePS5007117.637129189IPR001356Homeobox domain
SMARTSM003895.2E-19130193IPR001356Homeobox domain
CDDcd000865.51E-19131189No hitNo description
PfamPF000461.7E-18132187IPR001356Homeobox domain
PROSITE patternPS000270164187IPR017970Homeobox, conserved site
PROSITE profilePS5084843.103330567IPR002913START domain
SuperFamilySSF559614.49E-32332564No hitNo description
CDDcd088755.54E-122334563No hitNo description
PfamPF018529.2E-55339564IPR002913START domain
SMARTSM002341.8E-47339564IPR002913START domain
SuperFamilySSF559612.93E-23583821No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 835 aa     Download sequence    Send to blast
MNFGDFLDNT SGGGGGGGAR IVADIPFNNN NSNSSNNSSS NNNNMPAGAI SQPRLLAQSL  60
AKSMFNSPGL SLALQTGMEG QSEITRMAEN YEGNNSNGRR SREEEPDSRS GSDNLEGASG  120
DDQDAADKPP RKKRYHRHTP QQIQELESLF KECPHPDEKQ RLELSKRLSL ETRQVKFWFQ  180
NRRTQMKTQL ERHENSILRQ ENDKLRAENM SIREAMRNPI CTNCGGPAMI GEISLEEQHL  240
RIENARLKDE LDRVCALAGK FLGRPISSLV NAMPPPMPNS SLELGVGNNG FGGLSNVPTT  300
LPLAPPDFGV GISNSLPVVA STRQTTGIER SLERSMYLEL ALAAMDELVK MAQTDEPLWF  360
RSVEGGREIL NHEEYMRSFT PCIGMRPNSL VSEASRETGM VIINSLALVE TLMDSNKWAE  420
MFPCLIARTS TTDVISSGMG GTRNGALQLM HAELQVLSPL VPIREVNFLR FCKQHAEGVW  480
AVVDVSIDTI RETSSNAPTF PNSRILPSGC LVQDMPNGYS KVTWVEHGEY DESVIHHLYR  540
PLISAGMGFG AQRWVATLQR QCECLAILMS STVSSRDHTA ITPSGRRSML KLAQRMTNNF  600
CAGVCASTVH KWNKLCAGNV DEDVRVMTRK SVDDPGEPPG IVLSAATSVW LPISPQRLFD  660
FLRDERLRSE WDILSNGGPM QEMAHIAKGQ DHGNCVSLLR ASAINANQSS MLILQETCID  720
AAGALVVYAP VDIPAMHVVM NGGDSAYVAL LPSGFSIVPD GPGSRGSNTA NCGSNGPSCN  780
GGPDQRISGS LLTVAFQILV NSLPTAKLTV ESVETVNNLI SCTVQKIKAA LHCES
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ2221850.0GQ222185.1 Solanum lycopersicum cultivar M82 cutin deficient 2 (CD2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009782443.10.0PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
RefseqXP_016465399.10.0PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A1S3ZM710.0A0A1S3ZM71_TOBAC; homeobox-leucine zipper protein ANTHOCYANINLESS 2-like
TrEMBLA0A1U7WV070.0A0A1U7WV07_NICSY; homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
STRINGXP_009782443.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16262465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]