PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016465077.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 394aa MW: 41775.9 Da PI: 9.7839

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016465077.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124	4.9e-39	79	139	3	63
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 e+alkcprC+s+ntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+sss XP_016465077.1 79 ETALKCPRCESSNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSSS 139 6789*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-34	62	131	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.6E-32	81	136	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.571	82	136	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	84	120	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MVFSSIPAYL DPTNWQQQSG GSIPNHHQLT SPLSQSATPP SLPPPPPPLQ PHGSSGGAGS 60 IRPGSMADRA RLANIPMPET ALKCPRCESS NTKFCYFNNY SLSQPRHFCK TCRRYWTRGG 120 ALRNVPVGGG CRRNKRSSSK SSNNNSNNTS KSPASSTSTD GRQAANNNSG STSTISSHSN 180 SFSGPTSAAS LLGLMSPQIP PLRFLSPLGQ LTDHHHHHQF STPGNNMNLN FSTSGNVLGG 240 SSEGMMVNNN NLLGAGAGAG AGGGVASFLS SVNVEHWRMQ QQQMAQQFPN FIGGFDQSNS 300 PSGINNYQFQ GGVNEGVQFL GGNESTTSQI RPKISTSMLN QMASVKMEDN NHNQDQSALS 360 RQLLGIQGNE NWNTASAWSD LSASFSSSST SNAL

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MVFSSIPAYL DPTNWQQQSG GSIPNHHQLT SPLSQSATPP SLPPPPPPLQ PHGSSGGAGS  60
IRPGSMADRA RLANIPMPET ALKCPRCESS NTKFCYFNNY SLSQPRHFCK TCRRYWTRGG  120
ALRNVPVGGG CRRNKRSSSK SSNNNSNNTS KSPASSTSTD GRQAANNNSG STSTISSHSN  180
SFSGPTSAAS LLGLMSPQIP PLRFLSPLGQ LTDHHHHHQF STPGNNMNLN FSTSGNVLGG  240
SSEGMMVNNN NLLGAGAGAG AGGGVASFLS SVNVEHWRMQ QQQMAQQFPN FIGGFDQSNS  300
PSGINNYQFQ GGVNEGVQFL GGNESTTSQI RPKISTSMLN QMASVKMEDN NHNQDQSALS  360
RQLLGIQGNE NWNTASAWSD LSASFSSSST SNAL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009758525.1	0.0	PREDICTED: dof zinc finger protein DOF2.4-like
Refseq	XP_016465077.1	0.0	PREDICTED: dof zinc finger protein DOF2.4-like
TrEMBL	A0A1S3ZL43	0.0	A0A1S3ZL43_TOBAC; dof zinc finger protein DOF2.4-like
TrEMBL	A0A1U7V9L6	0.0	A0A1U7V9L6_NICSY; dof zinc finger protein DOF2.4-like
STRING	XP_009758525.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1917	24	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	3e-45	DNA binding with one finger 2.4