PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016464850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 253aa MW: 29188.6 Da PI: 9.5725 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.9 | 2.3e-15 | 16 | 95 | 9 | 99 |
HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 9 dvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +k+g l +p f+ ++ +g +++ + ++g++W vkl + y +++GW++F++ ++L+ gD++vF+++g++ef v +f++ XP_016464850.1 16 PGFKNG-LKIPVGFL-KYlKGH--DHIENAILRRDGKKWLVKL--ND----YRFEAGWSDFAEHHDLQLGDMLVFRHEGNMEF--EVVIFDS 95 566666.********.665544..4567788899*********..55....55*************************99999..7777775 PP | |||||||
2 | B3 | 51.7 | 1.6e-16 | 152 | 236 | 4 | 89 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 + ++++ ++ l++p++fa++ g+ +++ +++l+de rsW+v+l +++++ +t+GW +F a+gL++gD F+l+++++ XP_016464850.1 152 AIIKPYCISKPVLYFPRHFAKSSGLMNRK-CEMILKDEAQRSWSVRLGPLAGRRHFGITSGWAKFRAAKGLQVGDAYKFELIKNEK 236 567888889999********999877554.59***************77888889**************************98754 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.2E-22 | 3 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.08E-22 | 3 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.492 | 7 | 96 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.38E-18 | 8 | 94 | No hit | No description |
SMART | SM01019 | 2.2E-15 | 10 | 96 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.6E-12 | 18 | 95 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 6.28E-19 | 144 | 245 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.6E-19 | 144 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.28E-17 | 148 | 244 | No hit | No description |
PROSITE profile | PS50863 | 12.464 | 149 | 245 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.0E-14 | 150 | 245 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-15 | 151 | 236 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MKIPPKKPHF FKPILPGFKN GLKIPVGFLK YLKGHDHIEN AILRRDGKKW LVKLNDYRFE 60 AGWSDFAEHH DLQLGDMLVF RHEGNMEFEV VIFDSSHCDR EYVEYLQQQE EANNVEFKGA 120 TNIRKKPSNM IPLNAQVSTP TSGDDDPPYF VAIIKPYCIS KPVLYFPRHF AKSSGLMNRK 180 CEMILKDEAQ RSWSVRLGPL AGRRHFGITS GWAKFRAAKG LQVGDAYKFE LIKNEKIPIA 240 HFHCRYSGIG EEH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009801949.1 | 0.0 | PREDICTED: B3 domain-containing protein REM14-like | ||||
Refseq | XP_016464850.1 | 0.0 | PREDICTED: B3 domain-containing protein REM14-like | ||||
TrEMBL | A0A1S3ZJZ8 | 0.0 | A0A1S3ZJZ8_TOBAC; B3 domain-containing protein REM14-like | ||||
TrEMBL | A0A1U7YRV2 | 0.0 | A0A1U7YRV2_NICSY; B3 domain-containing protein REM14-like | ||||
STRING | XP_009801949.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA322 | 15 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24700.1 | 4e-36 | B3 family protein |