PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016464707.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 342aa    MW: 39174.8 Da    PI: 6.4199
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016464707.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding65.21.2e-201663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ede+l+d++k++G  +W +I+r+ g++R++k+c++rw++yl
   XP_016464707.1 16 KGPWTEDEDEKLIDYIKKYGHTNWQLIPRKAGLKRCGKSCRLRWNNYL 63
                     79*********************************************7 PP
2Myb_DNA-binding51.32.6e-1669114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++ eE+e++++++  lG++ W++Ia++++ gRt++++k++++++l
   XP_016464707.1  69 RGGFSHEEEEIIINLHSVLGNK-WSRIAAHLP-GRTDNEIKNFYNTHL 114
                      7889******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.0321167IPR017930Myb domain
SuperFamilySSF466891.36E-3013110IPR009057Homeodomain-like
SMARTSM007178.3E-181565IPR001005SANT/Myb domain
PfamPF002491.9E-181663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-251770IPR009057Homeodomain-like
CDDcd001672.08E-141863No hitNo description
SMARTSM007172.3E-1568116IPR001005SANT/Myb domain
PROSITE profilePS5129420.00768118IPR017930Myb domain
PfamPF002491.8E-1469114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-2671118IPR009057Homeodomain-like
CDDcd001677.24E-1172113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MGRYPCCKLD DNDLKKGPWT EDEDEKLIDY IKKYGHTNWQ LIPRKAGLKR CGKSCRLRWN  60
NYLRPDIKRG GFSHEEEEII INLHSVLGNK WSRIAAHLPG RTDNEIKNFY NTHLKKKLLK  120
LGIDPNTHKP ISDLNSLLKF SNQFSSNSNH FVSLASTLRL QAHFTLLAKI QQLINSNLFS  180
SIQGNILSNP NPLLFHESLK YESGQPQFLD SSLENFTTTI PCLDNTNSLS NDYSYISNSS  240
EVPSGTSDKI EMIQRRLAQS FLCNDDMQKS RNSSNNFELC QANELNSNEN QVEGVLARAS  300
TQGNCNFNQN FIPTFSELDD IAAWEIPQDD EEINTFWNTI FQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-32131184108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016464707.10.0PREDICTED: transcription factor MYB35-like
SwissprotQ9SBF32e-69MYB92_ARATH; Transcription factor MYB92
TrEMBLA0A1S3ZK240.0A0A1S3ZK24_TOBAC; transcription factor MYB35-like
STRINGXP_009789695.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.22e-70myb domain protein 9
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]