PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016464665.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 272aa    MW: 31439.2 Da    PI: 8.2927
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016464665.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding431e-131663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W+++Ed++l+d++  +G  +W++++   g++R +k+c++rw +yl
   XP_016464665.1 16 KGLWSPDEDQKLKDYIITYGHVCWSSVPINAGLKRNGKSCRLRWINYL 63
                     678*****************99**********9*************97 PP
2Myb_DNA-binding50.16.5e-1669114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++teEde ++ ++ +  ++ W++Ia++++ gRt++++k++w++yl
   XP_016464665.1  69 RGAFSTEEDETILTLHSMISSK-WSRIAQHLP-GRTDNEIKNYWHSYL 114
                      89********************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.4531163IPR017930Myb domain
SuperFamilySSF466892.97E-2614110IPR009057Homeodomain-like
SMARTSM007175.3E-121565IPR001005SANT/Myb domain
PfamPF002495.4E-121663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-201770IPR009057Homeodomain-like
CDDcd001676.92E-91963No hitNo description
PROSITE profilePS5129422.77764118IPR017930Myb domain
SMARTSM007172.1E-1368116IPR001005SANT/Myb domain
PfamPF002491.9E-1469114IPR001005SANT/Myb domain
CDDcd001672.64E-871113No hitNo description
Gene3DG3DSA:1.10.10.605.1E-2571118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MRCKPTVDKP KQKHKKGLWS PDEDQKLKDY IITYGHVCWS SVPINAGLKR NGKSCRLRWI  60
NYLRPGLKRG AFSTEEDETI LTLHSMISSK WSRIAQHLPG RTDNEIKNYW HSYLKKRLAK  120
KAKSEGQSQN IDGVSSSSSS LKLTWRNSSL DSFAQTEGSL VYTDQDFSLV DFLKEPRKSK  180
FRKVLFAEWF SLDQFNGQDF QNSDLSKNNL CYNSSEFQDA FMMSKGAYEN DINIQGINNE  240
TVDDDMFQAQ LKFEDQLSTN GFEELLYGDF NI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-22161187108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016464665.10.0PREDICTED: transcription factor MYB23-like
TrEMBLA0A1S3ZJI70.0A0A1S3ZJI7_TOBAC; transcription factor MYB23-like
STRINGXP_009589497.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.15e-61myb domain protein 19