PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016464652.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 445aa    MW: 49168.2 Da    PI: 8.302
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016464652.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.63.4e-16237283455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn+ ErrRRdriN+++ +L++l+P+a      K +Ka++L ++++Y+k+Lq
  XP_016464652.1 237 VHNQSERRRRDRINQKMKTLQRLVPNA-----SKTDKASMLDEVINYLKQLQ 283
                     6*************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.39E-16227287No hitNo description
PROSITE profilePS5088817.752233282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-19236306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.2E-14237283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-18238299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-17239288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MSHCTVPTWN PRHQRQEQAV EAEEPNKYPH VHNQQNQINH FMPMSKCEKV AELTWENPQI  60
GMQGVGGILS MSQTKPTILG RAGDTLESIV HQATYHGQNQ TSIQNYGQNQ NLKFGMCVGK  120
WGESSQHQMA PPPSTRTGGA TVLAKKRMRS ESYGGNLVGE DEYEERSACA SASATFCREN  180
DTTMVTWPSF DESSRSIKSK TTCDEDSACH DGGSENKEEE HETKGSNSSR RSRAAVVHNQ  240
SERRRRDRIN QKMKTLQRLV PNASKTDKAS MLDEVINYLK QLQAQVQLMS SARNMAPQMM  300
MPLGMHQHIQ MSLLARMGMG VGLGMGMGMF DMTALARAAA PHQSLTTHYP IHTNPIANPT  360
NPFIPPAFAM PAAPAIPSAA QANTVGRATT AVTPAPYSAF LTQSMDTEYF NNMAALYRQQ  420
ANNHSTQTTD SKLNQGNLNI QGQRE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241246ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2385682e-69AC238568.1 Solanum lycopersicum chromosome 3 clone C03HBa0071P11, complete sequence.
GenBankHG9755152e-69HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016464652.10.0PREDICTED: transcription factor UNE10-like isoform X2
TrEMBLA0A1S3ZJY00.0A0A1S3ZJY0_TOBAC; transcription factor UNE10-like isoform X2
STRINGXP_009630765.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.12e-35bHLH family protein