PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016464627.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 387aa    MW: 42536.2 Da    PI: 5.3833
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016464627.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.67.3e-16141187455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  XP_016464627.1 141 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 187
                     6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-20134197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-20134197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.86137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.45E-17140191No hitNo description
PfamPF000102.5E-13141187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-18143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MANNNIYHHN ASSSFSLTEP DDISVFLRHI LHPSSNFVTH EMQYSSSLPH LLPKNQHGLD  60
ISNGELSSVL NSSAGGIFSS SYGAYNVPAN VSSSSVGTMD NEPDEYECES EGGTEDLGVE  120
ASTQPPPPSN TNSKRSRAAE VHNLSEKRRR SRINEKMKAL QNLIPNSNKT DKASMLDEAI  180
EYLKQLQLQV QMLTMRNGLS MYPLGLPRVL QQNQVSQLSM GLCEGNGCTN AKAAGALHVS  240
QDTLLNAIFS PSENRTETKL TPVETMSNVN HSNNAFESES SINVHLDPFQ FSRSTSKGIL  300
REDWLPLHEM SERQSKTVSI GENLASSVPF DASELKRNTL EACLLRYQSG AMSETNMDCD  360
QLLAPQLYCH AGRSTSVDTI KTECSNF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0042352e-69FJ004235.1 Catharanthus roseus bHLH transcription factor MYC5 (MYC5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783822.10.0PREDICTED: transcription factor SPATULA-like isoform X1
RefseqXP_016464627.10.0PREDICTED: transcription factor SPATULA-like isoform X1
TrEMBLA0A1S3ZJV80.0A0A1S3ZJV8_TOBAC; transcription factor SPATULA-like isoform X1
TrEMBLA0A1U7WV930.0A0A1U7WV93_NICSY; transcription factor SPATULA-like isoform X1
STRINGXP_009783822.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA98502227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.12e-43bHLH family protein