PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016464602.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 534aa MW: 60368.1 Da PI: 5.1573 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 332.9 | 5.8e-102 | 152 | 527 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaalklfsevsPilkf 93 lv+lLl+cAeav +d++l ++lL+++ ++p gd++qR+ +f+ +L++rl+ + ++ ++l + + ++ +e+ a++ +++++P++ f XP_016464602.1 152 LVHLLLACAEAVGCRDTRLSDSLLTQIWPAVTPFGDSLQRVSYCFALGLQSRLMLlqHRNNAGATLIQDQLAASSRAEKREAYHWLHQITPYMAF 246 68**************************************************98732445556666667777777999999************** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egpp.slRiTgvgspesgskeelee.tgerLakfAeel..gvpfefnvlva 183 ++++aN aI +a g+e++HiiD+++ + +QW +++++L+++p ++pp +RiTg+ + +++ ele +++ + ++A++ +++ef+v+ + XP_016464602.1 247 GFMAANDAICKASRGKECLHIIDLGMLHIFQWQSIIRTLTAQPdSPPPrLVRITGILEDTHD-FMELELgLKSLMDEVAATSsgSIRLEFQVIKE 340 *******************************************55555689*******6655.44444315555666665432279*****9844 PP GRAS 184 k.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 + + ++ e+L+v++gEal+Vn+v+qlh+ ++es + + ++L+++k+l P +v+vveq+a+hn++ Fl rfle+l+yysa+fdslea+lpr XP_016464602.1 341 PvSASLFTREKLDVREGEALIVNSVMQLHKYVKESRGSLK---TILQAIKKLGPALVTVVEQDANHNGPFFLGRFLESLHYYSAIFDSLEASLPR 432 3588999*************************88777666...9*************************************************** PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372 +s +rik+E+ ++ei+n+va eg++r+erhe++ +Wr++l++aGF+ v l+ ++qa+++l+ ++sdgy++ +e+g+l+lgWk+rp++++Sa XP_016464602.1 433 DSTTRIKIEKCHYAEEIRNIVAYEGSNRIERHERVDQWRKQLGRAGFQVVGLK--CMSQARMMLSVYGSDGYTLANEKGCLLLGWKGRPIMFASA 525 **************************************************995..89************************************** PP GRAS 373 Wr 374 W+ XP_016464602.1 526 WE 527 *5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 49.596 | 126 | 509 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.0E-99 | 152 | 527 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 534 aa Download sequence Send to blast |
MHEMNSDWVL SFQSHNQDFA IRQFCAAARM NDQQQQQQHY SQNSISELYT YTSTPDHSAS 60 SQEEQEFVDS FFNIDSYDKD PLDHQVNLDN EEFGGFTSMI LNEYSYENLS LLTDEEPRYT 120 VLEACSSSDD LTGAETISHD HVEAEVDQGL QLVHLLLACA EAVGCRDTRL SDSLLTQIWP 180 AVTPFGDSLQ RVSYCFALGL QSRLMLLQHR NNAGATLIQD QLAASSRAEK REAYHWLHQI 240 TPYMAFGFMA ANDAICKASR GKECLHIIDL GMLHIFQWQS IIRTLTAQPD SPPPRLVRIT 300 GILEDTHDFM ELELGLKSLM DEVAATSSGS IRLEFQVIKE PVSASLFTRE KLDVREGEAL 360 IVNSVMQLHK YVKESRGSLK TILQAIKKLG PALVTVVEQD ANHNGPFFLG RFLESLHYYS 420 AIFDSLEASL PRDSTTRIKI EKCHYAEEIR NIVAYEGSNR IERHERVDQW RKQLGRAGFQ 480 VVGLKCMSQA RMMLSVYGSD GYTLANEKGC LLLGWKGRPI MFASAWEVHN VASS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-53 | 159 | 526 | 26 | 378 | Protein SCARECROW |
5b3h_A | 2e-53 | 159 | 526 | 25 | 377 | Protein SCARECROW |
5b3h_D | 2e-53 | 159 | 526 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009768414.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
Refseq | XP_016464602.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
TrEMBL | A0A1S3ZJT6 | 0.0 | A0A1S3ZJT6_TOBAC; DELLA protein RGL1-like | ||||
TrEMBL | A0A1U7W1A5 | 0.0 | A0A1U7W1A5_NICSY; DELLA protein RGL1-like | ||||
STRING | XP_009768414.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14067 | 11 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 2e-76 | RGA-like 1 |