PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016464498.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 753aa MW: 86006.1 Da PI: 7.4843

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016464498.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	99.8	2.9e-31	63	151	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF +r+s+ ++s+r+++i +r+fvCskeg++ + +++ +k rr+r ++r+gCka+l+vkk+ +gkw +tk++++HnHel+p XP_016464498.1 63 FYNSYARRVGFGTRVSAYRRSRRDNTISSRQFVCSKEGFNPRPDEQ-HKPRRQRIVSRVGCKAHLTVKKQASGKWAITKFVKDHNHELVP 151 9*************************************999999.99*************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.2E-28	63	151	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.8E-28	269	359	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.066	553	585	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.0E-10	557	584	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.1E-9	560	587	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 753 aa Download sequence Send to blast
MESQPLNLES DAIEFDVGSG EEEEEEDYKH NSSGLDSGER CSSSDLEPYE GMEFESEQAA 60 RIFYNSYARR VGFGTRVSAY RRSRRDNTIS SRQFVCSKEG FNPRPDEQHK PRRQRIVSRV 120 GCKAHLTVKK QASGKWAITK FVKDHNHELV PPDQVHLLRS HRHVSGPARS LIDTLQAAGL 180 GATRVMSVLI KQSGGINNVG FTKSDCQNYM NQTRQRTLGT GAHYILEYLK QKQAEDPGFF 240 YVVQGGPSGN IFWADSTSRM NYSYFGDTVT FDTTYRTHRF RVPFAPFIGV NHHCQPVLFG 300 CALLLNESES SFIWLFQNWL AAMSGRHPVS ITTDHDRIIR SAIADVFPGA RHRFCKSNIF 360 RQVQERLSHS LQSFPLFEAE FQKCVNSTET IEEFELRWES LLGRYNHKDD EWLHSMYDAR 420 QHWVPVYLRD TFFGETSIAK TSDSTNSFFD GYIDASTNIH ILMTQYEKAT ASRHEKEVKA 480 ENDIINIAPI LKTPSPMEKQ AANVYTREIF LLFQRELMET LAYPATVIND TGPDVVYQVA 540 KFGEDHKVHY VQYNVFEKKG SCSCQLFDFS GIPCKHILAV FRVKNVLRLP SHYILKRWTR 600 KAKSEVVLDE DDLGLPSSHN ESFTARFEKL SLEATKYVKE GVDSEKVYQV SMNALREASK 660 KVAAAMCSTP APPQNLDMNK AKKLSLNGNQ DDCRVSCLVS QDEKIQELTT AVVNATEICE 720 AYRAKLLSIL REMEEQKLRI SLKVQSMRLN QMT

Sequence ? help Back to Top

Protein Sequence Length: 753 aa Download sequence Send to blast

MESQPLNLES DAIEFDVGSG EEEEEEDYKH NSSGLDSGER CSSSDLEPYE GMEFESEQAA  60
RIFYNSYARR VGFGTRVSAY RRSRRDNTIS SRQFVCSKEG FNPRPDEQHK PRRQRIVSRV  120
GCKAHLTVKK QASGKWAITK FVKDHNHELV PPDQVHLLRS HRHVSGPARS LIDTLQAAGL  180
GATRVMSVLI KQSGGINNVG FTKSDCQNYM NQTRQRTLGT GAHYILEYLK QKQAEDPGFF  240
YVVQGGPSGN IFWADSTSRM NYSYFGDTVT FDTTYRTHRF RVPFAPFIGV NHHCQPVLFG  300
CALLLNESES SFIWLFQNWL AAMSGRHPVS ITTDHDRIIR SAIADVFPGA RHRFCKSNIF  360
RQVQERLSHS LQSFPLFEAE FQKCVNSTET IEEFELRWES LLGRYNHKDD EWLHSMYDAR  420
QHWVPVYLRD TFFGETSIAK TSDSTNSFFD GYIDASTNIH ILMTQYEKAT ASRHEKEVKA  480
ENDIINIAPI LKTPSPMEKQ AANVYTREIF LLFQRELMET LAYPATVIND TGPDVVYQVA  540
KFGEDHKVHY VQYNVFEKKG SCSCQLFDFS GIPCKHILAV FRVKNVLRLP SHYILKRWTR  600
KAKSEVVLDE DDLGLPSSHN ESFTARFEKL SLEATKYVKE GVDSEKVYQV SMNALREASK  660
KVAAAMCSTP APPQNLDMNK AKKLSLNGNQ DDCRVSCLVS QDEKIQELTT AVVNATEICE  720
AYRAKLLSIL REMEEQKLRI SLKVQSMRLN QMT

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	0.0	HG975443.1 Solanum pennellii chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016464498.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_016464499.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1S3ZJB9	0.0	A0A1S3ZJB9_TOBAC; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_009591935.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]