PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016464438.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NF-YB | ||||||||
Protein Properties | Length: 218aa MW: 24206.2 Da PI: 4.4102 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 76.1 | 5.3e-24 | 11 | 99 | 3 | 91 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 ++d+ lP a +++i+k++lP + ++++d+++++ ec +efi +++se+++ c+re+r+ti+++ +l al lGf +y+e++ + +++r XP_016464438.1 11 KEDASLPKATMTKIIKEMLPPDVRVARDTQDLLIECCVEFINLISSESNEVCNREERRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHR 99 6899***************************************************************************9987666666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.5E-37 | 8 | 139 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.86E-33 | 12 | 142 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.2E-20 | 14 | 79 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MEPMDIVGKN KEDASLPKAT MTKIIKEMLP PDVRVARDTQ DLLIECCVEF INLISSESNE 60 VCNREERRTI APEHVLKALE VLGFGEYIEE VYAAYEQHRL ETMDTVRSGR CSNVAAMTEE 120 EALAEQQRMF AEARARMNGS ATVPAKQPDS EALAEQQRMF AEARARMNGS ATVPAKQPDS 180 EALAEQQRMF AEAHAEMNGG VTIPSKQPDS EADQNLTS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 1e-34 | 10 | 134 | 10 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 7e-37 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. | |||
GenBank | HG975518 | 7e-37 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016464437.1 | 1e-160 | PREDICTED: protein Dr1 homolog | ||||
Refseq | XP_016464438.1 | 1e-160 | PREDICTED: protein Dr1 homolog | ||||
Swissprot | P49592 | 4e-85 | NC2B_ARATH; Protein Dr1 homolog | ||||
TrEMBL | A0A1S3ZJQ0 | 1e-159 | A0A1S3ZJQ0_TOBAC; protein Dr1 homolog | ||||
STRING | XP_009792100.1 | 1e-127 | (Nicotiana sylvestris) | ||||
STRING | XP_009610372.1 | 1e-127 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.4 | 3e-89 | nuclear factor Y, subunit B13 |
Publications ? help Back to Top | |||
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