PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016464437.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NF-YB

Protein Properties

Length: 218aa MW: 24206.2 Da PI: 4.4102

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016464437.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	76.1	5.3e-24	11	99	3	91
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 ++d+ lP a +++i+k++lP + ++++d+++++ ec +efi +++se+++ c+re+r+ti+++ +l al lGf +y+e++ + +++r XP_016464437.1 11 KEDASLPKATMTKIIKEMLPPDVRVARDTQDLLIECCVEFINLISSESNEVCNREERRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHR 99 6899***************************************************************************9987666666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.5E-37	8	139	IPR009072	Histone-fold
SuperFamily	SSF47113	3.86E-33	12	142	IPR009072	Histone-fold
Pfam	PF00808	1.2E-20	14	79	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MEPMDIVGKN KEDASLPKAT MTKIIKEMLP PDVRVARDTQ DLLIECCVEF INLISSESNE 60 VCNREERRTI APEHVLKALE VLGFGEYIEE VYAAYEQHRL ETMDTVRSGR CSNVAAMTEE 120 EALAEQQRMF AEARARMNGS ATVPAKQPDS EALAEQQRMF AEARARMNGS ATVPAKQPDS 180 EALAEQQRMF AEAHAEMNGG VTIPSKQPDS EADQNLTS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	1e-34	10	134	10	133	Transcription Regulator NC2 beta chain
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	7e-37	HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBank	HG975518	7e-37	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016464437.1	1e-160	PREDICTED: protein Dr1 homolog
Refseq	XP_016464438.1	1e-160	PREDICTED: protein Dr1 homolog
Swissprot	P49592	4e-85	NC2B_ARATH; Protein Dr1 homolog
TrEMBL	A0A1S3ZJQ0	1e-159	A0A1S3ZJQ0_TOBAC; protein Dr1 homolog
STRING	XP_009792100.1	1e-127	(Nicotiana sylvestris)
STRING	XP_009610372.1	1e-127	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3820	22	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23090.4	3e-89	nuclear factor Y, subunit B13

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]