PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016464424.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 191aa MW: 21792.3 Da PI: 5.4801 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62 | 1.3e-19 | 56 | 107 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y GVr ++ +g+++AeIrd + ng r++lg+f+taeeAa a+++a+ +++g+ XP_016464424.1 56 KYIGVRKRP-WGKYAAEIRDSTRNG--IRVWLGTFDTAEEAAMAYDQAAFSMRGA 107 89*******.**********44465..*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.67E-30 | 55 | 115 | No hit | No description |
PROSITE profile | PS51032 | 22.036 | 56 | 114 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.1E-14 | 56 | 106 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.5E-35 | 56 | 120 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-23 | 56 | 116 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-30 | 56 | 115 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-10 | 57 | 68 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-10 | 80 | 96 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MEHLKNQYQE QTSNVSIVAE EVKVKVEAES SIETNSSKER ETNDEEVNFN PRNPQKYIGV 60 RKRPWGKYAA EIRDSTRNGI RVWLGTFDTA EEAAMAYDQA AFSMRGAQTC LNFPVEKVRE 120 SLQKMECNNI KDGLLSPAAA LKEKHKKRNS RSSRKKQVNI KEEENVLIFE DLGPDLLDEL 180 LSSENSSCSN Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-28 | 56 | 116 | 14 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 143 | 155 | KHKKRNSRSSRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00286 | DAP | Transfer from AT2G31230 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975450 | 1e-103 | HG975450.1 Solanum pennellii chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016464424.1 | 1e-140 | PREDICTED: ethylene-responsive transcription factor 15-like | ||||
Swissprot | A0A3Q7I5Y9 | 4e-49 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | A0A1S3ZJ47 | 1e-139 | A0A1S3ZJ47_TOBAC; ethylene-responsive transcription factor 15-like | ||||
STRING | XP_009804882.1 | 1e-139 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31230.1 | 4e-30 | ethylene-responsive element binding factor 15 |
Publications ? help Back to Top | |||
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