PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016464421.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARR-B
Protein Properties Length: 545aa    MW: 60889.3 Da    PI: 6.5825
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016464421.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like811.3e-25196249155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r++Wt +LH++Fv+av+q+ G +kA Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  XP_016464421.1 196 KARVVWTVDLHQKFVKAVNQI-GFDKAGPKKILDLMGVPWLTRENVASHLQKYRL 249
                     68*******************.********************************8 PP
2Response_reg81.52.7e-27251331109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vdD+p+ +++l+++l+k  y ev+++  ++eal+ll+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ G
  XP_016464421.1  25 VLVVDDDPTWLKILEKMLKKCSY-EVTVCGLAREALNLLRERKdgFDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHG 117
                     89*********************.***************999999**********************6644.8********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+ ++el++
  XP_016464421.1 118 ACDYLLKPIRMKELRN 133
                     *************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.13E-3622147IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23005.4E-4522156No hitNo description
SMARTSM004482.5E-3223135IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.85224139IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.2E-2425134IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.70E-3126139No hitNo description
PROSITE profilePS512949.761193252IPR017930Myb domain
SuperFamilySSF466897.88E-18194253IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-28194254IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-22196249IPR006447Myb domain, plants
PfamPF002493.5E-8198248IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MMENSKTTAG FSSPRSDNFP AGLRVLVVDD DPTWLKILEK MLKKCSYEVT VCGLAREALN  60
LLRERKDGFD IVISDVNMPD MDGFKLLEHV GLEMDLPVIM MSVDGETSRV MKGVQHGACD  120
YLLKPIRMKE LRNIWQHVLR KRMHEARDIG NHEMDQFDEV WMLNGTELLS GKKRKDFDNE  180
KEISDSRCVD SSSMKKARVV WTVDLHQKFV KAVNQIGFDK AGPKKILDLM GVPWLTRENV  240
ASHLQKYRLY LTRLQKENEV KASFCGMKHP NVSSKENSPQ NPVDVCADVI NDKCSGVSGD  300
KAIVQNGKAN IYESKVKGVV SMPVAEPRSV VGDNFGSKTS LSDSFALINT DVKSLNVPTP  360
YCFTGEAPQP QYKQDFKPRF PSCTQPTCSL NFVPSHEVRD RVSSKENKPS FFKSRSGVGK  420
LSALEAIQPV SHQINFHALE QIPSTTWSMT SQNVDQNLVN GLQSSPGNLT LGSGSVVASL  480
GEDASIQGEC FPAYYGLRNI QQFDYSDPQT ISGVPTCLYD TLRFDYEYPN DSLEGIVLDQ  540
GLFIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-18192254163ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754441e-114HG975444.1 Solanum pennellii chromosome ch05, complete genome.
GenBankHG9755171e-114HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016464421.10.0PREDICTED: two-component response regulator ARR11-like
SwissprotQ5N6V81e-126ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLA0A1S3ZJB40.0A0A1S3ZJB4_TOBAC; two-component response regulator ARR11-like
STRINGXP_009793670.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67882433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-117response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]