PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016464214.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 559aa MW: 62162.6 Da PI: 7.3004 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.8 | 1.9e-16 | 59 | 105 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd+ l +av+ + g++Wk+Ia+ ++ R++ qc +rwqk+l XP_016464214.1 59 KGGWTPEEDDTLRRAVAVYRGKCWKKIAEFFP-DRSEVQCLHRWQKVL 105 688*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 59 | 1e-18 | 111 | 157 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++++++v ++G+ W+ Ia+ ++ gR +kqc++rw+++l XP_016464214.1 111 KGPWTQEEDDKIIELVVRYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 157 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 55.7 | 1.1e-17 | 163 | 206 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT eE++ l+da++ +G++ W+ Ia+ ++ gRt++ +k++w++ XP_016464214.1 163 KDAWTLEEELALLDAHRIYGNK-WAEIAKVLP-GRTDNAIKNHWNS 206 679*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.381 | 54 | 105 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.8E-15 | 55 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-15 | 58 | 107 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-15 | 59 | 105 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-22 | 61 | 113 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.06E-13 | 62 | 105 | No hit | No description |
PROSITE profile | PS51294 | 31.313 | 106 | 161 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.77E-31 | 108 | 204 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-17 | 110 | 159 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-18 | 111 | 157 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.12E-14 | 113 | 157 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.3E-27 | 114 | 160 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.2E-23 | 161 | 212 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.7E-17 | 162 | 210 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 22.569 | 162 | 212 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.9E-15 | 163 | 206 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.19E-12 | 165 | 205 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 559 aa Download sequence Send to blast |
MDELKIEDCC TENKQSTAVS ASSVSENSGS VTVKSLEVCS PTPTSPAHRR TTGPIRRAKG 60 GWTPEEDDTL RRAVAVYRGK CWKKIAEFFP DRSEVQCLHR WQKVLNPDLV KGPWTQEEDD 120 KIIELVVRYG PTKWSVIAKS LPGRIGKQCR ERWHNHLNPN IKKDAWTLEE ELALLDAHRI 180 YGNKWAEIAK VLPGRTDNAI KNHWNSSMKK KLDFYLATGN LPSVGRDGLQ NGCKDTTGTA 240 SAEKALVCSH KGSDSTELAS SGTTDVCKIE NCDKNHQDAK LLVVNIDASN SGPKNESADS 300 EVVRWEAESP VMDSIHVKQI KEIKFEGYGK NSEVDQFKVI ETPFSCEIPT CGTLYYEPPQ 360 LESCISMDSD HLNIRWAHCE SDSSPSLSPS SFLTPPSSLK GSSLYSQTPE SILKIAARSF 420 PNTPSIFRKR KLNSTPGNKI GNADGDTHKD EVHDACEDKQ TDSSENKQTD SSEKYVMIRS 480 SSKNPSYNGI GPCDTEAFNA SPPYRVRSKR KSIFRSVEKQ LKFAFDNEQH NTSTGINDST 540 VKEISHVADC LRATRMGIT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-68 | 58 | 212 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-68 | 58 | 212 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016464214.1 | 0.0 | PREDICTED: uncharacterized protein LOC107787190 isoform X2 | ||||
TrEMBL | A0A1S3ZIJ7 | 0.0 | A0A1S3ZIJ7_TOBAC; uncharacterized protein LOC107787190 isoform X2 | ||||
STRING | XP_009607346.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 1e-138 | myb domain protein 3r-5 |