PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016464049.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SRS
Protein Properties Length: 353aa    MW: 38268 Da    PI: 8.3292
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016464049.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF7022298.7e-711272823153
          DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa......aeaaskrkrelkskkqsalsstkl 91 
                     +g+++CqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpaakrrerqqqlaa+++++++++      +++++  +++l+++++s+l++t+l
  XP_016464049.1 127 VGGMNCQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQHNQQQQtqqlslRADSNIIPKRLRENTSSSLACTRL 221
                     7899*****************************************************999988885666665555566666689999******** PP

          DUF702  92 ssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                     +  +s  e+  + +P+evss+avfrcv+vs++dd+e+++aYqtav+igGh+fkGiLydqG+e
  XP_016464049.1 222 PAISSGLEVGGH-FPAEVSSQAVFRCVKVSAIDDAEDQFAYQTAVNIGGHLFKGILYDQGPE 282
                     **9999777765.***********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.0E-67129282IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.3E-26131173IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016244.9E-28233281IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MSGFFTLGGG GGGGNKEQQQ QQEQDQLATN SFLLFKNEEI YNKGFELWQQ YYQLHQQRAQ  60
TPQHQVQEMD FSVGVGPSNN RRIISGSSSS SGNNNIVGDD NNNNNNHNYS NSFRVMRATG  120
GSSSSGVGGM NCQDCGNQAK KDCPHLRCRT CCKSRGFQCQ THVKSTWVPA AKRRERQQQL  180
AALQQHNQQQ QTQQLSLRAD SNIIPKRLRE NTSSSLACTR LPAISSGLEV GGHFPAEVSS  240
QAVFRCVKVS AIDDAEDQFA YQTAVNIGGH LFKGILYDQG PEGRYSGGGG ESSSGSAAAQ  300
QALNFITGAT TSTTAAAATS HQQQHGTMFD PSVYPTPINA FMAGTQFFPP PRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4110328e-41AM411032.1 Trifolium pratense AFLP fragment rc0085.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016464049.10.0PREDICTED: protein SHI RELATED SEQUENCE 1-like isoform X1
TrEMBLA0A1S3ZI560.0A0A1S3ZI56_TOBAC; protein SHI RELATED SEQUENCE 1-like isoform X1
STRINGXP_009599252.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67824110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.14e-62Lateral root primordium (LRP) protein-related