PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016463468.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 503aa MW: 59154.3 Da PI: 7.3367

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016463468.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	25.7	3.9e-08	28	96	1	80
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtk 80 +fY+e+A+ GF ++k++s+k+ + + ++ C ++ k+++++ +++r +C+a+++ +e++g w+v+k XP_016463468.1 28 DFYKEHARLSGFCIVKRTSNKK-GGDIVRYVQYGCDRSRKPRNKH----------VTKRRNCRARINGILEENGSWHVSK 96 6**************99998.66668999*998887765..........55999***99999***997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-5	28	97	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-28	134	226	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence Send to blast
MSNEFNEEDL VICPITGMWF SNKDVMFDFY KEHARLSGFC IVKRTSNKKG GDIVRYVQYG 60 CDRSRKPRNK HVTKRRNCRA RINGILEENG SWHVSKQKDR EFYYSVDMDS FGRLRNAVWV 120 HSHSKVAYEE FHDVICLDTT YLVNRYNMPF ALFVGVNQHR QSILLGCALM SSEDTTSYKM 180 VLSTWLGALN NVRPLAIMTD QCDSIKAVIN ALMPNTVHRY CIWHIFAKLR TKLSGVFDGK 240 IVKAEFKVLV LDSINVAEFE RRWTDYIVKY NLDVRDWFYK LYLEKEKWVH VYLNDHFWAG 300 MLSTQRSEGM HAFFDGFITR QSTLKLFAQQ YELAIRAKFE KELEAEYRSR CFEPKCLSEF 360 ACEEKLQVCY TREVFEFFQV QLRKLFHCEI STPEDHQANP GVEKYTITNS LFRSFNTRDP 420 FVFTVEYTPI GEYLSCSCKW FETRGILCCY ILKVLSHKRI KNVNERLEHD LLNWDDDMIV 480 PNWDLEDTHD GVSEGGGEGG XTN

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence Send to blast

MSNEFNEEDL VICPITGMWF SNKDVMFDFY KEHARLSGFC IVKRTSNKKG GDIVRYVQYG  60
CDRSRKPRNK HVTKRRNCRA RINGILEENG SWHVSKQKDR EFYYSVDMDS FGRLRNAVWV  120
HSHSKVAYEE FHDVICLDTT YLVNRYNMPF ALFVGVNQHR QSILLGCALM SSEDTTSYKM  180
VLSTWLGALN NVRPLAIMTD QCDSIKAVIN ALMPNTVHRY CIWHIFAKLR TKLSGVFDGK  240
IVKAEFKVLV LDSINVAEFE RRWTDYIVKY NLDVRDWFYK LYLEKEKWVH VYLNDHFWAG  300
MLSTQRSEGM HAFFDGFITR QSTLKLFAQQ YELAIRAKFE KELEAEYRSR CFEPKCLSEF  360
ACEEKLQVCY TREVFEFFQV QLRKLFHCEI STPEDHQANP GVEKYTITNS LFRSFNTRDP  420
FVFTVEYTPI GEYLSCSCKW FETRGILCCY ILKVLSHKRI KNVNERLEHD LLNWDDDMIV  480
PNWDLEDTHD GVSEGGGEGG XTN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016463468.1	0.0	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A1S3ZG93	0.0	A0A1S3ZG93_TOBAC; protein FAR-RED IMPAIRED RESPONSE 1-like
STRING	XP_009623583.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1301	9	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	3e-61	FAR1 family protein