PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016463435.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 510aa    MW: 58194.9 Da    PI: 4.6222
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016463435.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS174.96.2e-541475092373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      +lL +  ea+++g++el + ++  ++   +p g++++R+a+     L +r+a+         +    ++++s++   a+k+f++++Pi kf+h+
  XP_016463435.1 147 HHLLAAYGEAMENGHKELSEVIIRSIKGKINPLGESLERVAS----NLFSRIAD---------QEDYLKQESSKNLEVAFKAFYQIFPIGKFAHF 228
                     799999**********************************97....5899***9.........2222222335666678999************* PP

            GRAS  97 taNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvakrle 187
                     +aN+aI+e++  + e++Hi+Dfd+++G+QWp++++a+ +R++    l++T +++ e++   ++ + ee+++rL ++A+ +g++++++ +   ++e
  XP_016463435.1 229 AANSAIMESIPDDaETIHIVDFDMGEGIQWPPIIEAMCQRRKA---LKLTSIKKTEEEstsDQWRFEEIKRRLLDYAKPFGLRLQIEEM---TVE 317
                     **********88779*************************776...*******98887888999***********************97...889 PP

            GRAS 188 dleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvksl.......sPkvvvvveqe...adhnsesFlerflealeyysalfdsl 271
                     +l  e+ r+k+ +E l+ n++++l ++ + +  ++    e+Lkl k+l          +v++ + e    +hn+++F   f + l yy  +f+sl
  XP_016463435.1 318 ELAGEMRRMKKrNEWLVFNCMFRLPHMGKTKCRIHA--LEFLKLAKELllansstHRGLVTFGDGEamdNSHNTNTFSGFFNKNLIYYQLIFESL 410
                     999999999888***************966666655..777777776544332115679*****99433457899******************** PP

            GRAS 272 eaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee.sgslvlgWk 363
                     e  +p+   e+r  +E  +l++++++     + e      ++ + ++  +e G++  ++s+++  qak l+++ +     r+ee+ ++++vl Wk
  XP_016463435.1 411 ELYFPAYLaEARLAMESLFLAPQVCSFSWFHNWE------EMTSTSDSCGETGLQGKKISKENLLQAKVLVNEREtPLNVRIEEQrQHEMVLEWK 499
                     ****99877***************9988777776......56667899**************************9655688885549999***** PP

            GRAS 364 drpLvsvSaW 373
                     + pLv vS W
  XP_016463435.1 500 GTPLVRVSTW 509
                     ********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098525.54120488IPR005202Transcription factor GRAS
PfamPF035142.2E-51147509IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MMQSELLHNS WSSTFPQTEF CAIQIDPYES HKYGVSDSSI NSKDQDSSGI TFSDFTSLFP  60
DDVFTDLSMD DLEFDDVCIW LNDSESEGNE NMNISISCEM QKDGDLWSPA ISGVSSEPSI  120
AIPLTNSAIS LVIPGNSKEM DTQMSLHHLL AAYGEAMENG HKELSEVIIR SIKGKINPLG  180
ESLERVASNL FSRIADQEDY LKQESSKNLE VAFKAFYQIF PIGKFAHFAA NSAIMESIPD  240
DAETIHIVDF DMGEGIQWPP IIEAMCQRRK ALKLTSIKKT EEESTSDQWR FEEIKRRLLD  300
YAKPFGLRLQ IEEMTVEELA GEMRRMKKRN EWLVFNCMFR LPHMGKTKCR IHALEFLKLA  360
KELLLANSST HRGLVTFGDG EAMDNSHNTN TFSGFFNKNL IYYQLIFESL ELYFPAYLAE  420
ARLAMESLFL APQVCSFSWF HNWEEMTSTS DSCGETGLQG KKISKENLLQ AKVLVNERET  480
PLNVRIEEQR QHEMVLEWKG TPLVRVSTWM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1220541272271GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016463435.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
RefseqXP_018632222.10.0PREDICTED: nodulation-signaling pathway 2 protein-like isoform X1
TrEMBLA0A1S3ZG460.0A0A1S3ZG46_TOBAC; nodulation-signaling pathway 2 protein-like
STRINGPGSC0003DMT4000685070.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53611938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.11e-22RGA-like protein 3