PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016463189.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YA
Protein Properties Length: 270aa    MW: 30135.7 Da    PI: 9.9062
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016463189.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA84.41.8e-26102156258
       CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      p++VNaKQy++Il+RR+ Rak e e+kl  k rkp+lh SRh hA+rRpRg gGrF
  XP_016463189.1 102 GPIFVNAKQYHGILRRRKFRAK-EMENKL-LKPRKPFLHLSRHLHAMRRPRGGGGRF 156
                     69*******************9.566999.9*************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.2E-2999159IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115230.989100159IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.0E-20103125IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.1E-22103156IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.0E-20133156IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MTMHTIFTKG NETATWWGTT EFTTSSESQS SDSKSSEKAE KLSNVLDGVS TKSSNMDYQG  60
HFEPLIYAKY PYGEKCLGLF STYGSQVSGR IMLPLNLTSD EGPIFVNAKQ YHGILRRRKF  120
RAKEMENKLL KPRKPFLHLS RHLHAMRRPR GGGGRFLNTR KMNGSINDDT NGTTKTSNRK  180
SQPTGSQNSE VLQSDHIGNF NSPKETTSRM SCNSSEVTSF YSRGNLDTYP VNNPRPSVQA  240
FFDMMNTGHD IPMGSKWGSA AADSCCNLNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A1e-15101157260HAPB protein
4g92_A1e-15101157260HAPB protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4897582e-40AM489758.1 Petunia x hybrida partial mRNA for YA1 (nf-YA gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009613978.10.0PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1
RefseqXP_016463189.10.0PREDICTED: nuclear transcription factor Y subunit A-10-like
TrEMBLA0A1S3ZFR30.0A0A1S3ZFR3_TOBAC; nuclear transcription factor Y subunit A-10-like
STRINGXP_009613978.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37062347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.34e-41nuclear factor Y, subunit A10