PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016463173.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 268aa MW: 29257.5 Da PI: 9.3736 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.7 | 2.9e-39 | 20 | 80 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 k++a++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rkn+k+s XP_016463173.1 20 KDQAINCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNVPVGGGSRKNNKRS 80 5799*****************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-27 | 7 | 72 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.6E-33 | 21 | 78 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.779 | 24 | 78 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 26 | 62 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 268 aa Download sequence Send to blast |
MAAEIAAPNV TVEKKVRPVK DQAINCPRCN STNTKFCYYN NYSLTQPRYF CKTCRRYWTE 60 GGTLRNVPVG GGSRKNNKRS SSSSSSSQKL PDLNPNPSFS PQNPNKIIVG NSCQDLNLGF 120 QTVSHDHHQF HGVPQFLELP KMDSSNNGNN HLVFISSWYS TSGSTPISAL ELLRTGIASR 180 GFTSFITSPA PPDLNTLYTS GFPFQELKPR AGSNDHAAAA LSYSNGVQEN GGARIMFPLG 240 ADHHHHQSKG QENSTAGYWN GMLGGGSW |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016463170.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.5-like isoform X1 | ||||
TrEMBL | A0A1S3ZFB0 | 0.0 | A0A1S3ZFB0_TOBAC; dof zinc finger protein DOF2.5-like isoform X1 | ||||
STRING | XP_009760286.1 | 1e-179 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G61850.4 | 8e-52 | Dof family protein |