PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016463172.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 268aa MW: 29282.6 Da PI: 9.1995

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016463172.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.7	2.9e-39	35	95	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 k++a++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rkn+k+s XP_016463172.1 35 KDQAINCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNVPVGGGSRKNNKRS 95 5799*****************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-27	22	87	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.6E-33	36	93	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.779	39	93	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	41	77	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
METTQWTQDI GIVKSMAAEI AAPNVTVEKK VRPVKDQAIN CPRCNSTNTK FCYYNNYSLT 60 QPRYFCKTCR RYWTEGGTLR NVPVGGGSRK NNKRSSSSSS SSQKLPDLNP NPSFSPQNPN 120 KIIVGNSCQD LNLGFQTVSH DHHQFHGVPQ FLELPKMDSS NNGSTPISAL ELLRTGIASR 180 GFTSFITSPA PPDLNTLYTS GFPFQELKPR AGSNDHAAAA LSYSNGVQEN GGARIMFPLG 240 ADHHHHQSKG QENSTAGYWN GMLGGGSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009760287.1	0.0	PREDICTED: dof zinc finger protein DOF2.5 isoform X2
Refseq	XP_016463172.1	0.0	PREDICTED: dof zinc finger protein DOF2.5-like isoform X3
Swissprot	Q43385	1e-53	DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBL	A0A1S3ZFW7	0.0	A0A1S3ZFW7_TOBAC; dof zinc finger protein DOF2.5-like isoform X3
TrEMBL	A0A1U7UW71	0.0	A0A1U7UW71_NICSY; dof zinc finger protein DOF2.5 isoform X2
STRING	XP_009760286.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	5e-53	Dof family protein