PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016463114.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YC
Protein Properties Length: 138aa    MW: 15464.8 Da    PI: 10.395
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016463114.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC56.84.9e-1815981496
           NF-YC 14 tdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdiv 96
                     ++++ ++Pl r+kki+k d+d++++ +ea  l++ + elf+  lt +s   a e+kr+t+k   +  av+r + + dfl+d  
  XP_016463114.1 15 GEVHQLQMPLGRVKKIMKLDQDINKVNSEALHLIASSTELFLEVLTEKSAQVALEKKRKTIKLEHLRVAVKRHQpTSDFLLDSL 98
                    678999****************************************************************9976489****975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.4E-211885IPR009072Histone-fold
SuperFamilySSF471135.99E-201899IPR009072Histone-fold
PfamPF008083.1E-192184IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MAGEDQEKNS TAAGGEVHQL QMPLGRVKKI MKLDQDINKV NSEALHLIAS STELFLEVLT  60
EKSAQVALEK KRKTIKLEHL RVAVKRHQPT SDFLLDSLLV PSQPSDPSPK VQNRPRLSTE  120
KLLPTGTRRI EAFFQKST
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016463114.14e-96PREDICTED: nuclear transcription factor Y subunit C-4-like
TrEMBLA0A1S3ZFI99e-95A0A1S3ZFI9_TOBAC; nuclear transcription factor Y subunit C-4-like
STRINGXP_009612865.13e-94(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA114352425
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.13e-47nuclear factor Y, subunit C13