PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016463114.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NF-YC | ||||||||
Protein Properties | Length: 138aa MW: 15464.8 Da PI: 10.395 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 56.8 | 4.9e-18 | 15 | 98 | 14 | 96 |
NF-YC 14 tdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdiv 96 ++++ ++Pl r+kki+k d+d++++ +ea l++ + elf+ lt +s a e+kr+t+k + av+r + + dfl+d XP_016463114.1 15 GEVHQLQMPLGRVKKIMKLDQDINKVNSEALHLIASSTELFLEVLTEKSAQVALEKKRKTIKLEHLRVAVKRHQpTSDFLLDSL 98 678999****************************************************************9976489****975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.4E-21 | 18 | 85 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 5.99E-20 | 18 | 99 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.1E-19 | 21 | 84 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MAGEDQEKNS TAAGGEVHQL QMPLGRVKKI MKLDQDINKV NSEALHLIAS STELFLEVLT 60 EKSAQVALEK KRKTIKLEHL RVAVKRHQPT SDFLLDSLLV PSQPSDPSPK VQNRPRLSTE 120 KLLPTGTRRI EAFFQKST |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016463114.1 | 4e-96 | PREDICTED: nuclear transcription factor Y subunit C-4-like | ||||
TrEMBL | A0A1S3ZFI9 | 9e-95 | A0A1S3ZFI9_TOBAC; nuclear transcription factor Y subunit C-4-like | ||||
STRING | XP_009612865.1 | 3e-94 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11435 | 24 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43250.1 | 3e-47 | nuclear factor Y, subunit C13 |