PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016462960.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 291aa MW: 33327.7 Da PI: 5.566

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016462960.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	45.6	1.8e-14	24	114	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +Wt++ + +L++a ++ +l+rg l++++W++v++ + + + +r+ +qCk++++ l+kryk +k+ + + + +s++p+f++l+ XP_016462960.1 24 CWTEEATWTLVDAWGRRYIELNRGFLRQTDWQQVADSVnalhgHTAKTRRTDIQCKNRIDTLKKRYKVEKAKIVESNGTLTSSWPFFERLD 114 8************************************999999999***************9999998888788889***997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51029	8.518	19	121	IPR006578	MADF domain
Pfam	PF13837	4.2E-23	22	115	No hit	No description
Gene3D	G3DSA:1.10.601.10	5.6E-4	186	278	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MGEITAPSTQ VTAPSRPLPF REDCWTEEAT WTLVDAWGRR YIELNRGFLR QTDWQQVADS 60 VNALHGHTAK TRRTDIQCKN RIDTLKKRYK VEKAKIVESN GTLTSSWPFF ERLDFLIGNS 120 GNKVTAVMVS PLPLPSRSPP MGVPLPNRRS MTTATAAPVV TPVVLPQKRQ MPVLDDSYFR 180 RNYSAVAAAA AATAGGEEDY DDEEEEEEEE DMGMSEEKDG MRRLAKAIER FGEIYERVEE 240 MKQRQMVELE KQRMQFAKDL EVQRMQLFMD TQVQLQKIKH TKRSGSDDIY S

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016462960.1	0.0	PREDICTED: trihelix transcription factor ASIL2-like
TrEMBL	A0A1S3ZEQ5	0.0	A0A1S3ZEQ5_TOBAC; trihelix transcription factor ASIL2-like
STRING	XP_009628976.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1318	23	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	1e-38	sequence-specific DNA binding transcription factors