PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016462903.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 418aa    MW: 48244.4 Da    PI: 4.5662
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016462903.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.8e-1871128255
             AP2   2 gykGVrwdkkrgrWvAeIrd.pseng..kr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr++  +g+WvAeIr+ +++ g  k+  kr +lg+f t  +Aa a+++a+k ++g
  XP_016462903.1  71 IYRGVRQRT-WGKWVAEIREpVYNSGrfKTsgKRLWLGTFSTSVDAALAYDEAAKVMYG 128
                     69****999.**********666666785578***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.2E-1370128IPR001471AP2/ERF domain
CDDcd000182.39E-2870137No hitNo description
PROSITE profilePS5103221.75971136IPR001471AP2/ERF domain
SMARTSM003805.7E-3071144IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-1971137IPR016177DNA-binding domain
PRINTSPR003675.1E-97283IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.7E-2872137IPR001471AP2/ERF domain
PRINTSPR003675.1E-9102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MSSHILHRKQ KRRRNGCDSL EEILLKWKNH YQELNSSIED VQVKKKRKIP VKRSRKGCMR  60
GKGGPENSGC IYRGVRQRTW GKWVAEIREP VYNSGRFKTS GKRLWLGTFS TSVDAALAYD  120
EAAKVMYGSN AMLNFPDYCI QNDSSSIVSI ARTSSLESTD QSSVDHEDSG AEDAKIRVDQ  180
STFATSVVTA DEKQRSCCCL TEKSDVMPEE DYENELNDSG CSSRIDFKPP NYCVKVETPI  240
KEEIEKDEFV HDNDLERLKS YEVSNSLHIM NEETTDVKPH DLNILQEQPL DFRSTENPSE  300
DFCKRLEYME HWLMEDDCST EATKVPDTFC LTKNHDEDNS FQKFLEESFD FKPIMVSQES  360
AEFNYVKTEE QFDCTYNQQI DQQTDGIISN QADWNSSISW QPEDSIKDLS VFNFDFDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-2072136360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-2072136663ATERF1
3gcc_A5e-2072136663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803153.10.0PREDICTED: uncharacterized protein LOC104248568
RefseqXP_016462903.10.0PREDICTED: uncharacterized protein LOC107785980
TrEMBLA0A1S3ZEN70.0A0A1S3ZEN7_TOBAC; uncharacterized protein LOC107785980
TrEMBLA0A1U7YJ500.0A0A1U7YJ50_NICSY; uncharacterized protein LOC104248568
STRINGXP_009803153.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA79651530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.13e-42ERF family protein