PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016462512.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 410aa MW: 45742.2 Da PI: 7.2159

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016462512.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.5	1.5e-33	44	98	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG++kAtPk++l+lm+++gLtl+h+kSHLQkYRl XP_016462512.1 44 KPRLKWTPDLHERFIEAVNQLGGADKATPKSVLKLMGIQGLTLYHLKSHLQKYRL 98 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.38	41	101	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-31	42	99	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.78E-17	43	99	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.0E-24	44	99	IPR006447	Myb domain, plants
Pfam	PF00249	2.4E-10	46	97	IPR001005	SANT/Myb domain
Pfam	PF14379	4.2E-14	144	185	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MYHHHRQDKS MHPSTRMSIS ERHLFLQGGN GNGDSGLVLS TDAKPRLKWT PDLHERFIEA 60 VNQLGGADKA TPKSVLKLMG IQGLTLYHLK SHLQKYRLSK NLHGQANASG ANKAVAATGE 120 DRISENSATC MSNPSIGPQP NKNIQISEAI QIQIEVQRRL HEQLELRIEA QGKYLHAVLE 180 KAQETLGRQD MGTVGLEAAK VQLSELVSTV SNQCLNPTFS DIKELSRYSN QQTQATRLAD 240 RSIDSCLTSC EGSLRDNTMH NNQIGLRPFE FTPSIECEDI ENDTRIQQTA LRWCDNLKES 300 KKLFSAMNEG KEKTFTTETN CKDLSMSIGL QDGKLNGSSN HSDGKFNGTD TAVRLFHQAA 360 NRGDSMPERQ KSSQEYKLSY FAPKLDLNMH DETDAASSCK QFDLNGFSWT

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MYHHHRQDKS MHPSTRMSIS ERHLFLQGGN GNGDSGLVLS TDAKPRLKWT PDLHERFIEA  60
VNQLGGADKA TPKSVLKLMG IQGLTLYHLK SHLQKYRLSK NLHGQANASG ANKAVAATGE  120
DRISENSATC MSNPSIGPQP NKNIQISEAI QIQIEVQRRL HEQLELRIEA QGKYLHAVLE  180
KAQETLGRQD MGTVGLEAAK VQLSELVSTV SNQCLNPTFS DIKELSRYSN QQTQATRLAD  240
RSIDSCLTSC EGSLRDNTMH NNQIGLRPFE FTPSIECEDI ENDTRIQQTA LRWCDNLKES  300
KKLFSAMNEG KEKTFTTETN CKDLSMSIGL QDGKLNGSSN HSDGKFNGTD TAVRLFHQAA  360
NRGDSMPERQ KSSQEYKLSY FAPKLDLNMH DETDAASSCK QFDLNGFSWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-22	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-22	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-22	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-22	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-22	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-22	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-22	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-22	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-22	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-22	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-22	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-22	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975449	2e-81	HG975449.1 Solanum pennellii chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009758039.1	0.0	PREDICTED: uncharacterized protein LOC104210771 isoform X3
Refseq	XP_016462512.1	0.0	PREDICTED: uncharacterized protein LOC107785672 isoform X3
Swissprot	Q9SQQ9	1e-122	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A1S3ZE17	0.0	A0A1S3ZE17_TOBAC; uncharacterized protein LOC107785672 isoform X3
TrEMBL	A0A1U7V722	0.0	A0A1U7V722_NICSY; uncharacterized protein LOC104210771 isoform X3
STRING	XP_009758035.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.1	1e-115	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]