PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016462511.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | G2-like | ||||||||
Protein Properties | Length: 414aa MW: 46333.8 Da PI: 7.4268 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 106.5 | 1.5e-33 | 44 | 98 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG++kAtPk++l+lm+++gLtl+h+kSHLQkYRl XP_016462511.1 44 KPRLKWTPDLHERFIEAVNQLGGADKATPKSVLKLMGIQGLTLYHLKSHLQKYRL 98 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.38 | 41 | 101 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-31 | 42 | 99 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.96E-17 | 43 | 99 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.1E-24 | 44 | 99 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.5E-10 | 46 | 97 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.7E-23 | 142 | 189 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MYHHHRQDKS MHPSTRMSIS ERHLFLQGGN GNGDSGLVLS TDAKPRLKWT PDLHERFIEA 60 VNQLGGADKA TPKSVLKLMG IQGLTLYHLK SHLQKYRLSK NLHGQANASG ANKAATGEDR 120 ISENSATCMS NPSIGPQPNK NIQISEAIQI QIEVQRRLHE QLEVQRHLQL RIEAQGKYLH 180 AVLEKAQETL GRQDMGTVGL EAAKVQLSEL VSTVSNQCLN PTFSDIKELS RYSNQQTQAT 240 RLADRSIDSC LTSCEGSLRD NTMHNNQIGL RPFEFTPSIE CEDIENDTRI QQTALRWCDN 300 LKESKKLFSA MNEGKEKTFT TETNCKDLSM SIGLQDGKLN GSSNHSDGKF NGTDTAVRLF 360 HQAANRGDSM PERQKSSQEY KLSYFAPKLD LNMHDETDAA SSCKQFDLNG FSWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-22 | 43 | 100 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-22 | 43 | 100 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 3e-22 | 44 | 100 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-22 | 44 | 100 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-22 | 44 | 100 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-22 | 44 | 100 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-22 | 43 | 100 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-22 | 43 | 100 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-22 | 43 | 100 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-22 | 43 | 100 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-22 | 43 | 100 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-22 | 43 | 100 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC244920 | 0.0 | AC244920.2 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-6e17 map 10, complete sequence. | |||
GenBank | HG975449 | 0.0 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. | |||
GenBank | HG975522 | 0.0 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009758038.1 | 0.0 | PREDICTED: uncharacterized protein LOC104210771 isoform X2 | ||||
Refseq | XP_016462511.1 | 0.0 | PREDICTED: uncharacterized protein LOC107785672 isoform X2 | ||||
Swissprot | Q9SQQ9 | 1e-127 | PHL9_ARATH; Myb-related protein 2 | ||||
TrEMBL | A0A1S3ZDZ4 | 0.0 | A0A1S3ZDZ4_TOBAC; uncharacterized protein LOC107785672 isoform X2 | ||||
TrEMBL | A0A1U7UV12 | 0.0 | A0A1U7UV12_NICSY; uncharacterized protein LOC104210771 isoform X2 | ||||
STRING | XP_009758035.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04030.3 | 1e-121 | G2-like family protein |
Publications ? help Back to Top | |||
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