PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016462509.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 416aa    MW: 46504 Da    PI: 7.4268
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016462509.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.41.5e-334498155
         G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                    kprl+Wtp+LHerF+eav+qLGG++kAtPk++l+lm+++gLtl+h+kSHLQkYRl
  XP_016462509.1 44 KPRLKWTPDLHERFIEAVNQLGGADKATPKSVLKLMGIQGLTLYHLKSHLQKYRL 98
                    79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.3841101IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-314299IPR009057Homeodomain-like
SuperFamilySSF466899.14E-174399IPR009057Homeodomain-like
TIGRFAMsTIGR015577.1E-244499IPR006447Myb domain, plants
PfamPF002492.5E-104697IPR001005SANT/Myb domain
PfamPF143792.7E-23144191IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MYHHHRQDKS MHPSTRMSIS ERHLFLQGGN GNGDSGLVLS TDAKPRLKWT PDLHERFIEA  60
VNQLGGADKA TPKSVLKLMG IQGLTLYHLK SHLQKYRLSK NLHGQANASG ANKAVAATGE  120
DRISENSATC MSNPSIGPQP NKNIQISEAI QIQIEVQRRL HEQLEVQRHL QLRIEAQGKY  180
LHAVLEKAQE TLGRQDMGTV GLEAAKVQLS ELVSTVSNQC LNPTFSDIKE LSRYSNQQTQ  240
ATRLADRSID SCLTSCEGSL RDNTMHNNQI GLRPFEFTPS IECEDIENDT RIQQTALRWC  300
DNLKESKKLF SAMNEGKEKT FTTETNCKDL SMSIGLQDGK LNGSSNHSDG KFNGTDTAVR  360
LFHQAANRGD SMPERQKSSQ EYKLSYFAPK LDLNMHDETD AASSCKQFDL NGFSWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-2243100158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-2243100158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-2244100157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-2244100157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-2244100157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-2244100157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-2243100158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-2243100158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-2243100158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-2243100158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-2243100158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-2243100158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2449200.0AC244920.2 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-6e17 map 10, complete sequence.
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
GenBankHG9755220.0HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009758035.10.0PREDICTED: uncharacterized protein LOC104210771 isoform X1
RefseqXP_009758037.10.0PREDICTED: uncharacterized protein LOC104210771 isoform X1
RefseqXP_016462509.10.0PREDICTED: uncharacterized protein LOC107785672 isoform X1
RefseqXP_016462510.10.0PREDICTED: uncharacterized protein LOC107785672 isoform X1
SwissprotQ9SQQ91e-129PHL9_ARATH; Myb-related protein 2
TrEMBLA0A1S3ZDT30.0A0A1S3ZDT3_TOBAC; uncharacterized protein LOC107785672 isoform X1
TrEMBLA0A1U7V8C00.0A0A1U7V8C0_NICSY; uncharacterized protein LOC104210771 isoform X1
STRINGXP_009758035.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29462451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.31e-120G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]