PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016462240.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 528aa    MW: 57548.2 Da    PI: 5.9745
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016462240.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.8e-09343391355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  XP_016462240.1 343 NSHSLAERLRREKISERMKYLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 391
                     58*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.23E-16338408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.85E-10338395No hitNo description
Gene3DG3DSA:4.10.280.103.4E-16340402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.535340390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-6343391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-10346396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MRMDMVSKDD AESEKRCEDA LSFQSPNMSS DWQLSGSNLT NASVGMVSNS NPMVDSFCAS  60
VWDHPISSSN LGLCDTNIQT IHCTTNADRL RTNVNRMLAM SWTQPNAMSL KGDMFVPPTP  120
GMLPQSLSQF PADSGFIERA ARFSCFSGGK VGDMMNPFTI PSSPNTYHNA LALHRPQEVF  180
ASNILQSPSA AISQKQHVGN AVEGSEDVSL PLEHGATDRS PIKHEKNESF ARSLDEAKEC  240
VGISGNESDE AECSGHQEEV EGKDSSARGL GSKKRKRSGQ DTELDHTKGA QQPPAEPTKD  300
QTEIQKGEQN RLGGKNSKQG SQSADPPKEE YIHIRAKRGQ ATNSHSLAER LRREKISERM  360
KYLQDLVPGC NKVTGKAVML DEIINYVQSL QRQVEFLSVK LATIDPRLDF NIDGLLAKDI  420
LHSRAVPSSS LAFAPDMTMS YHSLQQLPTP LLQSGLPGLG NSTNALLRSI YPHLSATSGG  480
YKESSSQLPN IWDDELHNVV EMGLSTSAPL HSQNLSGPLP SGQMKEES
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1272277KKRKRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009792953.10.0PREDICTED: transcription factor bHLH49-like isoform X1
RefseqXP_016462240.10.0PREDICTED: transcription factor bHLH49-like
TrEMBLA0A1S3ZCR30.0A0A1S3ZCR3_TOBAC; transcription factor bHLH49-like
TrEMBLA0A1U7XQ100.0A0A1U7XQ10_NICSY; transcription factor bHLH49-like isoform X1
STRINGXP_009792953.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28712150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-110bHLH family protein