PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016462079.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 314aa MW: 35449.1 Da PI: 4.443

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016462079.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.2	7.8e-05	227	247	34	54
TTS-STCHHHHHHHHHHHHHH CS HLH 34 pskKlsKaeiLekAveYIksL 54 p K + a++L++A+eYIk L XP_016462079.1 227 PTFKTDTASVLQEAIEYIKFL 247 666999*************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.13E-6	227	261	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-6	227	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.58E-4	230	251	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MADEYFQAGV CGENSWWNST KNIFGLSPCA SSIYDDPIGN LISWPISDLL DMKTKIDLSS 60 PSSTLDWNHS ANDKLDNTYP SMLQEDINSS LNYQQENGVD CPNKLKRNFS SITEDSSTNS 120 KPMNQDFTYY SDLLQTLFDT DPDQQPQQSF FTNNQPINCT SSNYRQSFND FAPSLPTSSE 180 IRASLPNITS KSNIEEIRES TSRSLTKNNS NEPSYKRPRI ETPSPLPTFK TDTASVLQEA 240 IEYIKFLHDQ VNVLSNTYMK KGSPTQCQQV REREGLKQDL RSQGLCLVPI SSTFPVTAET 300 TMDFWTPTFG ATFK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016462079.1	0.0	PREDICTED: transcription factor bHLH112-like isoform X2
TrEMBL	A0A1S3ZCL8	0.0	A0A1S3ZCL8_TOBAC; transcription factor bHLH112-like isoform X2
STRING	XP_009802434.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.4	1e-41	bHLH family protein