PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016462055.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WOX

Protein Properties

Length: 381aa MW: 41976.5 Da PI: 7.7612

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016462055.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.7	1.7e-17	51	111	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++ +eq+++Le+ F++ +p ++e++++ +kl ++ +++V++WFqNr+ + k+ XP_016462055.1 51 KPRWNPRPEQIRILEAIFNSgMVNPPRDEIRKIRAKLqeygQVGDANVFYWFQNRKSRSKH 111 89***************99***********************************995 PP
2	Wus_type_Homeobox	111.7	3.8e-36	50	113	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW+P+peQi+iLe++++sG+++P+++ei++i+a+L+eyG+++d+NVfyWFQNrk+R+++kq XP_016462055.1 50 PKPRWNPRPEQIRILEAIFNSGMVNPPRDEIRKIRAKLQEYGQVGDANVFYWFQNRKSRSKHKQ 113 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.3E-7	27	114	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.382	47	112	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.13E-12	47	116	IPR009057	Homeodomain-like
SMART	SM00389	4.9E-9	49	116	IPR001356	Homeobox domain
CDD	cd00086	4.35E-8	50	113	No hit	No description
Pfam	PF00046	4.3E-15	51	111	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MASSNRHWPS MFKSKPCNQW QHDINSSLIQ RTPCNPGGGG GGCEERSPEP KPRWNPRPEQ 60 IRILEAIFNS GMVNPPRDEI RKIRAKLQEY GQVGDANVFY WFQNRKSRSK HKQRHLQNKA 120 QQTHNNTNIT HSHVAITAPS SSSSSSDKSS PNSTGHHKSS LTFSIGSANV MDLLNSPTAS 180 VNQQQQNYNF QSANNEFLST ESFFFTVQPP TPTQSPTAIT QGFCIPDSTG FSHVSNSSGH 240 LFLSEWMGIG QAPSKKAEDE KINLQSQLNY AVTSAPTTNT HSTVFPLTST TIPTISHIQG 300 VVEPTDAGPT RSTVFINDVA FEVGLGPFNV REVFGDDAVL IHSSGEPLIT NEWGLTLQPL 360 QHGAFYYLLR TSTPSNTIDL I

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MASSNRHWPS MFKSKPCNQW QHDINSSLIQ RTPCNPGGGG GGCEERSPEP KPRWNPRPEQ  60
IRILEAIFNS GMVNPPRDEI RKIRAKLQEY GQVGDANVFY WFQNRKSRSK HKQRHLQNKA  120
QQTHNNTNIT HSHVAITAPS SSSSSSDKSS PNSTGHHKSS LTFSIGSANV MDLLNSPTAS  180
VNQQQQNYNF QSANNEFLST ESFFFTVQPP TPTQSPTAIT QGFCIPDSTG FSHVSNSSGH  240
LFLSEWMGIG QAPSKKAEDE KINLQSQLNY AVTSAPTTNT HSTVFPLTST TIPTISHIQG  300
VVEPTDAGPT RSTVFINDVA FEVGLGPFNV REVFGDDAVL IHSSGEPLIT NEWGLTLQPL  360
QHGAFYYLLR TSTPSNTIDL I

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009622252.1	0.0	PREDICTED: WUSCHEL-related homeobox 9 isoform X2
Refseq	XP_016462055.1	0.0	PREDICTED: WUSCHEL-related homeobox 9-like isoform X2
TrEMBL	A0A1S3ZC73	0.0	A0A1S3ZC73_TOBAC; WUSCHEL-related homeobox 9-like isoform X2
STRING	XP_009622251.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	7e-60	homeobox-3