PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016462000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 444aa MW: 50294.9 Da PI: 6.7104 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.2 | 6.2e-18 | 26 | 116 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ffkv+ d + +++l++p fa++ ++ ++++ led+sg++W+v++ + ++g+ +++GW +F +++gL+ gDf+vF++++ + f v+ XP_016462000.1 26 FFKVM--IDKSFRKILYFPPMFARSVSHL--TDQETYLEDSSGQRWRVTV--CDHKGSLAIRQGWPKFSSEHGLNLGDFLVFYYVEGQYF--IVQ 112 89999..88999999**********9766..4568***************..*******************************9876666..999 PP EE-S CS B3 96 vfrk 99 +++k XP_016462000.1 113 IYDK 116 9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.3E-20 | 23 | 119 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.1E-22 | 23 | 119 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.07 | 24 | 117 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.53E-18 | 25 | 115 | No hit | No description |
Pfam | PF02362 | 1.0E-15 | 26 | 116 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3E-13 | 26 | 117 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 444 aa Download sequence Send to blast |
MGCEKEASDE CKQNSLLFHG KRVSSFFKVM IDKSFRKILY FPPMFARSVS HLTDQETYLE 60 DSSGQRWRVT VCDHKGSLAI RQGWPKFSSE HGLNLGDFLV FYYVEGQYFI VQIYDKSGCQ 120 KIKFYSDFCK GKRKTRTYPE KTSQVKLLQT TDINPVNKRS KISAVSESEK VTCKAHITKF 180 ATNIDADTGK GQLVYPAVYV DESFCMVDRD AQYHQGDDRL CLHLSSFEMP ASKPLAEGTS 240 SLLKADDGNS NHVETNLRSQ TEPNLVVVAD YLNSEELLPK FEAEITGSDM VPAEDIPLLS 300 QKDQNDCPSG INQITREKSN DASQFARETR LVKKEFEETA AKAYYPARAI SARETRLVKK 360 EFEETAAKAY YPARAISDSG KEPANGNEKV IKSEPADSGD MPSLTAVSYS CLLEVDGRDF 420 LELPESWRKY LMKKAKLERW IIFL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016462000.1 | 0.0 | PREDICTED: uncharacterized protein LOC107785253 isoform X8 | ||||
TrEMBL | A0A1S3ZC20 | 0.0 | A0A1S3ZC20_TOBAC; uncharacterized protein LOC107785253 isoform X8 | ||||
STRING | XP_009616981.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53310.1 | 6e-11 | B3 family protein |