PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016461913.1 | ||||||||
Common Name | NtabSPL2, SPL2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | SBP | ||||||||
Protein Properties | Length: 463aa MW: 50206.9 Da PI: 8.3581 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 127.6 | 4.8e-40 | 170 | 247 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++dls+akey+r+h+vC+ hsk+p+v+++g+ +rfCqqCsrfh+lsefDe+krsCrrrL++hn+rrrk+q+ XP_016461913.1 170 RCQVEGCSHDLSSAKEYYRKHRVCDSHSKCPKVIIAGVARRFCQQCSRFHSLSEFDEKKRSCRRRLSDHNARRRKPQQ 247 6**************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.3E-32 | 164 | 232 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.966 | 168 | 245 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.62E-37 | 169 | 250 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.1E-30 | 171 | 244 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 463 aa Download sequence Send to blast |
MEWNAKWDWG NLVMFGSEAA KSPKELQLTD WGVEEDGELD AGSFNLSSGG SGSGSGTGGY 60 VSDVGHGSSI KSSISASTDS SPKEGLKACN FSFDGSSEDL SKKVKLCSRN SPPMEASVGS 120 VEPLIGLKLG KRTFETIGGA KVSSFPEKHV SSAAAAKKTK SSTQNAPTPR CQVEGCSHDL 180 SSAKEYYRKH RVCDSHSKCP KVIIAGVARR FCQQCSRFHS LSEFDEKKRS CRRRLSDHNA 240 RRRKPQQETI QFNSARLSSL FYDSRQPMNL VLNHSQLVQS RAAANSTWES TEETKFSITR 300 GSTPKPERAG STNGLSLLPG IQLSRAVGAH SNVSSCLLLP SKGHTSEVFN RGATESMFNM 360 GTGREFPRAL SLLSTNSWGS SEPETVSLNN PTHANQSSMP EQMMQAIPQG VPLMSCEYWQ 420 GEQPSSDPRD HTLAANSHAG GSFQGIELFK PPFDTDFYLN ALN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 8e-26 | 171 | 244 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 226 | 243 | KKRSCRRRLSDHNARRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LC072721 | 0.0 | LC072721.1 Nicotiana tabacum NtabSPL2 mRNA for squamosa promoter binding protein spl2, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001312326.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_016461913.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_016461914.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 12 | ||||
TrEMBL | A0A0C5DEV8 | 0.0 | A0A0C5DEV8_TOBAC; SBP-box 2 | ||||
STRING | XP_009766987.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4129 | 24 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 5e-56 | squamosa promoter binding protein-like 2 |
Link Out ? help Back to Top | |
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Entrez Gene | 107785188 |
Publications ? help Back to Top | |||
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