PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016461877.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 437aa    MW: 49282.9 Da    PI: 8.4758
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016461877.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS354.51.6e-108444311373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++cA++ ssg+l+ a+a+L+++ +las +gd+mqRlaa f+  La rl++ +++ly+al+ +   +++ ++   ++ +f +++P+l f++
  XP_016461877.1  44 LIQLLFTCANHASSGNLHHADACLSQILQLASITGDSMQRLAAWFASSLAIRLVKRWPGLYNALNHRGPVPRRIVDLDRSRIIFAKAFPYLGFAY 138
                     689*******************************************************************9999999999999************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                      + N+ + +a+++++ +Hi+D++ +    W+++l++  + p+g+p+l+iT v++    +k +lee+++r++k A++l+++f+fn l   +l +l+
  XP_016461877.1 139 AVINRVLIQAMSEDRIIHIVDLGSGDTKLWIPFLKTVVNLPNGTPHLKITCVNN----NKAMLEEMASRIKKEAKALDISFQFNSL-NVNLRELT 228
                     ******************************************************....9**************************5.889***** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrll.................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                     l++L+vk gE+la  +vl+lh ll                 +++v+  ++ +e+L ++ slsPkv+++veqeadhn +++++rf+e l+yysalf
  XP_016461877.1 229 LDMLKVKAGESLAFVSVLNLHVLLaeddrinshfslnknnnNNNVKDCKRMSEFLTMLHSLSPKVLILVEQEADHNLSKLVDRFVEGLHYYSALF 323
                     **************************************98877777777999******************************************* PP

            GRAS 269 dsleaklpres....eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
                     ds+++++   +    eer+ vE++ lg+ei+n+vaceg er+erhe+++kW  rl++ GF+pv+l ++++++ak+l++ ++ dgy++ +++g l+
  XP_016461877.1 324 DSIDTTFKGSNcslcEERVAVEQM-LGKEIENMVACEGLEREERHERFGKWIVRLTRGGFRPVRLWYDIMEDAKRLVEAYGRDGYKIISQKGNLM 417
                     ******998889999*********.********************************************************************** PP

            GRAS 360 lgWkdrpLvsvSaW 373
                     ++W+drp++svSaW
  XP_016461877.1 418 ICWHDRPIYSVSAW 431
                     ************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.07218412IPR005202Transcription factor GRAS
PfamPF035145.5E-10644431IPR005202Transcription factor GRAS
Gene3DG3DSA:3.40.50.1505.0E-5140221IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MNISSPAIKP DVTLSLTLSS FTSTTTTTDT SPDALKPKEG GVKLIQLLFT CANHASSGNL  60
HHADACLSQI LQLASITGDS MQRLAAWFAS SLAIRLVKRW PGLYNALNHR GPVPRRIVDL  120
DRSRIIFAKA FPYLGFAYAV INRVLIQAMS EDRIIHIVDL GSGDTKLWIP FLKTVVNLPN  180
GTPHLKITCV NNNKAMLEEM ASRIKKEAKA LDISFQFNSL NVNLRELTLD MLKVKAGESL  240
AFVSVLNLHV LLAEDDRINS HFSLNKNNNN NNVKDCKRMS EFLTMLHSLS PKVLILVEQE  300
ADHNLSKLVD RFVEGLHYYS ALFDSIDTTF KGSNCSLCEE RVAVEQMLGK EIENMVACEG  360
LEREERHERF GKWIVRLTRG GFRPVRLWYD IMEDAKRLVE AYGRDGYKII SQKGNLMICW  420
HDRPIYSVSA WNCAFIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-443643211379Protein SCARECROW
5b3h_A3e-443643210378Protein SCARECROW
5b3h_D3e-443643210378Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0126390.0AB012639.1 Nicotiana sylvestris Lhcb1*7 gene for light harvesting chlorophyll a/b-binding protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016461877.10.0PREDICTED: scarecrow-like protein 3
TrEMBLA0A1S3ZCB60.0A0A1S3ZCB6_TOBAC; scarecrow-like protein 3
STRINGXP_009603019.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA135701216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-110scarecrow-like 3