PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016461836.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 228aa MW: 26223.6 Da PI: 4.8874 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.4 | 1.4e-09 | 78 | 125 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rEr RR+++N++f+eL ++l + + K +K++iL A++ +++L XP_016461836.1 78 NKACRERLRREKLNERFSELCSVLEPG---RPVKTDKMAILGDAIRVLNEL 125 6789**********************8...89**************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.67E-13 | 66 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.67E-7 | 72 | 128 | No hit | No description |
PROSITE profile | PS50888 | 13.129 | 74 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.8E-7 | 78 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-8 | 80 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.7E-11 | 81 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MDQLDSFRDN SWDLIDINSF IDEAPSDFFW NDQIQNQNQR AVAELEAPLS SATFQEECIE 60 TECPRKRGRN ESCSKQGNKA CRERLRREKL NERFSELCSV LEPGRPVKTD KMAILGDAIR 120 VLNELKTESE EYKEINQKLM EEIKTLKAEK NELREEKLAL KADKERMEQE LKATATPASF 180 IPPHPAAYQP AVNKMAVFPS YGYVPMWQYL PPSSRDTSQD HALRPPAA |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00102 | PBM | Transfer from AT4G14410 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975521 | 9e-86 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009609911.1 | 1e-169 | PREDICTED: transcription factor bHLH104-like | ||||
Refseq | XP_016461836.1 | 1e-169 | PREDICTED: transcription factor bHLH104-like | ||||
Swissprot | Q8L467 | 2e-73 | BH104_ARATH; Transcription factor bHLH104 | ||||
TrEMBL | A0A1S3ZBQ1 | 1e-168 | A0A1S3ZBQ1_TOBAC; transcription factor bHLH104-like | ||||
STRING | XP_009609911.1 | 1e-169 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4762 | 21 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14410.2 | 3e-65 | bHLH family protein |