PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016461792.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 449aa    MW: 49650.8 Da    PI: 9.3244
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016461792.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.7e-052345123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C++C+k F r  nL+ H r H
  XP_016461792.1 23 FICEICNKGFQRDQNLQLHRRGH 45
                    89*******************88 PP
2zf-C2H214.10.00014100122123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k +  +s+ k H +t+
  XP_016461792.1 100 WKCEKCSKKYAVQSDWKAHTKTC 122
                     58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.13E-82245No hitNo description
Gene3DG3DSA:3.30.160.601.2E-52245IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0222345IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8452345IPR007087Zinc finger, C2H2
PfamPF121715.3E-52345IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002802545IPR007087Zinc finger, C2H2
SMARTSM00355896595IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-488121IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.13E-895120No hitNo description
SMARTSM00355130100120IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MLTDPDAEVI ALSPKTLMAT NRFICEICNK GFQRDQNLQL HRRGHNLPWK LKQRNKQEIV  60
KKKVYICPEK SCVHNDPSRA LGDLTGIKKH FSRKHGEKKW KCEKCSKKYA VQSDWKAHTK  120
TCGTREYKCD CGTLFSRKDS FITHRAFCDA LAEESARITS VGTCNNLNFN QQPNLAGRIS  180
QIGTGFAQDF SGMTSGNSLH HQQQKPRLSL WLNQANNNSQ LNNTLHMSAP SSNLFASSSS  240
TGLPDHMVQM QSPNNVFGNQ MQWAIDKNSA ATTPATSMTK TLCSMYSDNQ NQHPKSSTPM  300
SATALLQKAS QIGSTKSSPT FFTNTFGVMN SSSSSSNTPM FNTLSQNTSE MHQVFAKQSE  360
EYNPTDNELL NGCPNMSSLA NTKAINLDQA LMQTGGMQTQ AVSFNFDNSL TRDFLGMGNE  420
GGRPFLTPEL AKFASMTSAM GLSHYSSGH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-3896161368Zinc finger protein JACKDAW
5b3h_F4e-3896161368Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ7183040.0AJ718304.1 Nicotiana tabacum cDNA-AFLP-fragment BSTT41-2-420, cultivar Bright Yellow 2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016461792.10.0PREDICTED: zinc finger protein JACKDAW-like
TrEMBLA0A1S3ZC310.0A0A1S3ZC31_TOBAC; zinc finger protein JACKDAW-like
STRINGXP_009598165.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.12e-99C2H2-like zinc finger protein