PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016461626.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 308aa MW: 33994.4 Da PI: 8.3707

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016461626.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.4	5e-18	141	195	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k XP_016461626.1 141 RKKLRLTKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 195 788899***********************************************98 PP
2	HD-ZIP_I/II	126	1.6e-40	141	231	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rl+keq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E d+e+Lkr++++l+een+rL+ke +eLr +lk XP_016461626.1 141 RKKLRLTKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTELDCEYLKRCCEKLTEENRRLQKELQELR-ALK 231 69*************************************************************************************9.555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.01E-18	133	198	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.86	137	197	IPR001356	Homeobox domain
SMART	SM00389	5.5E-15	139	201	IPR001356	Homeobox domain
Pfam	PF00046	1.5E-15	141	195	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.4E-17	141	195	IPR009057	Homeodomain-like
CDD	cd00086	1.80E-15	141	198	No hit	No description
PROSITE pattern	PS00027	0	172	195	IPR017970	Homeobox, conserved site
Pfam	PF02183	1.0E-9	197	231	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	2.1E-24	197	240	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MELALSLGGD TQKPFSFLEK STNNSSSHEE LLTGSNKDIR FCMGLGKSNP NIAAEPGLTN 60 GPERMVLDMN RRPIILAEEA EEGTDLSSPN SNSAVSSFQM EFSSIYRSGI SRSLIGKRDH 120 FEAGNTERGV SDEDENNGLA RKKLRLTKEQ SAFLEESFKE HNTLNPKQKL ALAKQLNLRP 180 RQVEVWFQNR RARTKLKQTE LDCEYLKRCC EKLTEENRRL QKELQELRAL KSSQPFYMQL 240 PATTLTMCPS CERVATTAAT AVPTAAAATT TSATATANAA ATNTTLSLAK PNLFPFPPAQ 300 IHPPQAAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	189	197	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009604990.1	0.0	PREDICTED: homeobox-leucine zipper protein HOX11-like isoform X3
Refseq	XP_016461626.1	0.0	PREDICTED: homeobox-leucine zipper protein HOX11-like isoform X3
Swissprot	P46665	6e-79	HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBL	A0A1S3ZB29	0.0	A0A1S3ZB29_TOBAC; homeobox-leucine zipper protein HOX11-like isoform X3
STRING	XP_009604988.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	6e-61	homeobox from Arabidopsis thaliana