PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016461625.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 315aa    MW: 34898.4 Da    PI: 8.3699
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016461625.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox40.54.6e-13140202256
                     T--SS--HHHHHHHHHHHHHSSS--........HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknryps........aeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tkeq   Lee F+++++++        ++++  LAk+l+L  rqV vWFqNrRa+ k
  XP_016461625.1 140 RKKLRLTKEQSAFLEESFKEHNTLNpeknfnilQKQKLALAKQLNLRPRQVEVWFQNRRARTK 202
                     788899*************7666651111111156788899********************98 PP
2HD-ZIP_I/II1117.8e-36140238192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLepe........rKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                     +kk+rl+keq+++LEesF+e+++L+pe        +K +la++L+l+prqv+vWFqnrRARtk+kq+E d+e+Lkr++++l+een+rL+ke +eL
  XP_016461625.1 140 RKKLRLTKEQSAFLEESFKEHNTLNPEknfnilqkQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTELDCEYLKRCCEKLTEENRRLQKELQEL 234
                     69***********************963333333368999******************************************************* PP

     HD-ZIP_I/II  88 reelk 92 
                     r +lk
  XP_016461625.1 235 R-ALK 238
                     9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007114.981136204IPR001356Homeobox domain
SMARTSM003894.4E-11138208IPR001356Homeobox domain
PfamPF000461.3E-10140202IPR001356Homeobox domain
SuperFamilySSF466892.14E-13140213IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.6E-14140207IPR009057Homeodomain-like
CDDcd000869.60E-13140205No hitNo description
PROSITE patternPS000270179202IPR017970Homeobox, conserved site
PfamPF021831.1E-9204238IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.1E-24204247IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MELALSLGGD TQKPFSFLEK STNNSSSHEE LLTGSNKDIR FCMGLGKSNP NTAEPGLTNG  60
PERMVLDMNR RPIILAEEAE EGTDLSSPNS NSAVSSFQME FSSIYRSGIS RSLIGKRDHF  120
EAGNTERGVS DEDENNGLAR KKLRLTKEQS AFLEESFKEH NTLNPEKNFN ILQKQKLALA  180
KQLNLRPRQV EVWFQNRRAR TKLKQTELDC EYLKRCCEKL TEENRRLQKE LQELRALKSS  240
QPFYMQLPAT TLTMCPSCER VATTAATAVP TAAAATTTSA TATANAAATN TTLSLAKPNL  300
FPFPPAQIHP PQAAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196204RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009604989.10.0PREDICTED: homeobox-leucine zipper protein HOX11-like isoform X2
RefseqXP_016461625.10.0PREDICTED: homeobox-leucine zipper protein HOX11-like isoform X2
SwissprotP466656e-76HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A1S3ZAY90.0A0A1S3ZAY9_TOBAC; homeobox-leucine zipper protein HOX11-like isoform X2
STRINGXP_009604988.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.13e-64homeobox from Arabidopsis thaliana