PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016461624.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 316aa    MW: 34981.5 Da    PI: 8.3699
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016461624.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox40.54.6e-13141203256
                     T--SS--HHHHHHHHHHHHHSSS--........HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknryps........aeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tkeq   Lee F+++++++        ++++  LAk+l+L  rqV vWFqNrRa+ k
  XP_016461624.1 141 RKKLRLTKEQSAFLEESFKEHNTLNpeknfnilQKQKLALAKQLNLRPRQVEVWFQNRRARTK 203
                     788899*************7666651111111156788899********************98 PP
2HD-ZIP_I/II111.17.5e-36141239192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLepe........rKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                     +kk+rl+keq+++LEesF+e+++L+pe        +K +la++L+l+prqv+vWFqnrRARtk+kq+E d+e+Lkr++++l+een+rL+ke +eL
  XP_016461624.1 141 RKKLRLTKEQSAFLEESFKEHNTLNPEknfnilqkQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTELDCEYLKRCCEKLTEENRRLQKELQEL 235
                     69***********************963333333368999******************************************************* PP

     HD-ZIP_I/II  88 reelk 92 
                     r +lk
  XP_016461624.1 236 R-ALK 239
                     9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007114.981137205IPR001356Homeobox domain
SMARTSM003894.4E-11139209IPR001356Homeobox domain
SuperFamilySSF466892.14E-13141214IPR009057Homeodomain-like
CDDcd000868.26E-13141206No hitNo description
PfamPF000461.3E-10141203IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.6E-14141208IPR009057Homeodomain-like
PROSITE patternPS000270180203IPR017970Homeobox, conserved site
PfamPF021831.1E-9205239IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.1E-24205248IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MELALSLGGD TQKPFSFLEK STNNSSSHEE LLTGSNKDIR FCMGLGKSNP NIAAEPGLTN  60
GPERMVLDMN RRPIILAEEA EEGTDLSSPN SNSAVSSFQM EFSSIYRSGI SRSLIGKRDH  120
FEAGNTERGV SDEDENNGLA RKKLRLTKEQ SAFLEESFKE HNTLNPEKNF NILQKQKLAL  180
AKQLNLRPRQ VEVWFQNRRA RTKLKQTELD CEYLKRCCEK LTEENRRLQK ELQELRALKS  240
SQPFYMQLPA TTLTMCPSCE RVATTAATAV PTAAAATTTS ATATANAAAT NTTLSLAKPN  300
LFPFPPAQIH PPQAAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197205RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009604988.10.0PREDICTED: homeobox-leucine zipper protein HOX11-like isoform X1
RefseqXP_016461624.10.0PREDICTED: homeobox-leucine zipper protein HOX11-like isoform X1
SwissprotP466657e-76HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A1S3ZB980.0A0A1S3ZB98_TOBAC; homeobox-leucine zipper protein HOX11-like isoform X1
STRINGXP_009604988.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.13e-64homeobox from Arabidopsis thaliana