PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016461616.1

Common Name

NtBBF1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 267aa MW: 29351.3 Da PI: 8.2028

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016461616.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.3	2e-39	33	93	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ke+a++cprC+stntkfCyynnyslsqPryfCk+CrryWt GG+lrnvPvGgg+rknk+s+ XP_016461616.1 33 KEQAINCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTDGGSLRNVPVGGGSRKNKRSN 93 7899******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-27	30	85	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.3E-33	35	91	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.012	37	91	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	39	75	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MDTSHWPQGI GLAKAVEPSK PVPVTERKPR PQKEQAINCP RCNSTNTKFC YYNNYSLSQP 60 RYFCKTCRRY WTDGGSLRNV PVGGGSRKNK RSNSSSNNSS SSTSSSYKKI PDLTIPTSSS 120 TQNPKIINEP HDLNLTFNPS TTSNFSNISE FMALPLMNPN STTSFMSSIM PQISDSNNIM 180 YSSSSTGLPN LHDLKPTLNF SLDGFDNNNG YGSLQGETAG AKLFFPLDDL KNVSTANDDH 240 EFDEQNRGQA AESHGFWNGM LGGGSSW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	X97942	0.0	X97942.1 N.tabacum mRNA for zinc finger protein, BBF1.1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009608024.1	0.0	PREDICTED: dof zinc finger protein DOF4.6-like
Refseq	XP_016461616.1	0.0	PREDICTED: dof zinc finger protein DOF4.6-like
TrEMBL	A0A1S3ZB20	0.0	A0A1S3ZB20_TOBAC; dof zinc finger protein DOF4.6-like
STRING	XP_009608024.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46590.1	2e-40	Dof family protein