PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016461574.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 234aa MW: 26122 Da PI: 10.1961 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33 | 1e-10 | 47 | 92 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h ++Er+RR+riN +++L++l P++ +K +K+ +L++Av +k+L XP_016461574.1 47 THAMAERKRRERINAHLHTLKKLFPHL-----PKKDKSRVLTEAVTQLKEL 92 8*************************8.....699**********999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.59E-13 | 34 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.471 | 43 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.54E-8 | 46 | 97 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.9E-12 | 47 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.1E-8 | 47 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.8E-8 | 49 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 3.32E-5 | 140 | 209 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 1.6E-6 | 141 | 208 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MLSSLQGCNG FLQRANSVQL LHQRNCNMVD EYGKSTRKNK SKDAALTHAM AERKRRERIN 60 AHLHTLKKLF PHLPKKDKSR VLTEAVTQLK ELRKKVAQQM ETQKDSEGNY NGLSSFFLPG 120 ENDEVLLNYH EESDSDERTV KATVCCEDRP GLNRDLSTAV RLVQGRMIKA EMATVGGRTK 180 AEMVVVLCKV GGGEKDIGQL KRALKAVVEN RALGLGSSLN LGRRLGDNKW ACFG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 51 | 56 | ERKRRE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009779545.1 | 1e-173 | PREDICTED: putative transcription factor bHLH107 isoform X1 | ||||
Refseq | XP_016461574.1 | 1e-173 | PREDICTED: putative transcription factor bHLH107 | ||||
TrEMBL | A0A1S3ZB47 | 1e-172 | A0A1S3ZB47_TOBAC; putative transcription factor bHLH107 | ||||
TrEMBL | A0A1U7WZA1 | 1e-172 | A0A1U7WZA1_NICSY; putative transcription factor bHLH107 isoform X1 | ||||
STRING | XP_009779545.1 | 1e-173 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13713 | 13 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56770.1 | 4e-26 | bHLH family protein |