PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016461568.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 445aa    MW: 49313.5 Da    PI: 6.7698
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016461568.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.52.4e-08352392954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r+RR++i +++  L++++P        K++ a++L +A +Y+k L
  XP_016461568.1 352 ARQRREKISEKIKILQKMVPGG-----SKMDTASMLDEAANYLKFL 392
                     69******************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.926343392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.71E-10349397No hitNo description
SMARTSM003533.4E-13349398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-14349406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-12351401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.6E-6352392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MDTLDCDATP IIRSASSSWK NQQQQMIKDS LMMCSFAPVS SKANVFTPIQ QQCHDFGDSN  60
APSAMVLQEF GAAFDPIHVL SSWNIPQRQE AATKLAADSV AGKSRTGPSR DCTKIGPSSF  120
RPQNNVVPNL GDSLSAVCGL MPDNLDCNGP ITKSRSLDCL LSATNTSNYT DTSVEDDEIS  180
MIFSDDSKRL WNTNTDNFAV SSGESAIDAF ILKPIDANDS NNIECPVNET DQHNNPIRSS  240
EAKRHMTKRR RYNRALLQPD LSTKDSGFKL ISEDKPKSKK LRSENTNINF QQSSSSASSA  300
DDEPDSEAIT QMKEMIYCAA AFRPMSFGTE VEAEKPKRKN VRISSDPQTV AARQRREKIS  360
EKIKILQKMV PGGSKMDTAS MLDEAANYLK FLRSQIQAME AFGHKIDPLI MTNIRSLSSI  420
PFNYPFPMQP HFPIQLANPV QRPYS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009790621.10.0PREDICTED: transcription factor bHLH87-like
RefseqXP_016461568.10.0PREDICTED: transcription factor bHLH87-like
TrEMBLA0A1S3ZB120.0A0A1S3ZB12_TOBAC; transcription factor bHLH87-like
TrEMBLA0A1U7XLX80.0A0A1U7XLX8_NICSY; transcription factor bHLH87-like
STRINGXP_009790621.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43502242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.18e-62bHLH family protein