PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016461559.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 357aa MW: 40009.2 Da PI: 4.6419 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.1 | 2.8e-20 | 81 | 131 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr++ +g+WvAeIr+p + +r +lg+f+ta eAa a+++a+++++g XP_016461559.1 81 CKYRGVRQRT-WGKWVAEIREP-----HrgRRLWLGTFDTAIEAALAYDEAARAMYG 131 79*****999.**********6.....337************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.1E-14 | 81 | 131 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.54E-32 | 81 | 140 | No hit | No description |
SuperFamily | SSF54171 | 3.86E-21 | 82 | 139 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.3E-31 | 82 | 140 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.9E-36 | 82 | 145 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.509 | 82 | 139 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.3E-10 | 83 | 94 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.3E-10 | 105 | 121 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MAILDQASNM MSLPLDYTRK RKSRSRKDAP KNVAETLAKW KEVNEKLESS DDGKKPVRKV 60 PAKGSKKGCM KGKGGPENGR CKYRGVRQRT WGKWVAEIRE PHRGRRLWLG TFDTAIEAAL 120 AYDEAARAMY GPCARLNLPN YPLSNESSKD DSLLPTVSQS DSTTASSLTE TTNIPKIKFE 180 DRESESRSDG PRSVFYEAGT PSSSVKEEVK DEAKGVLDER GIVEIKEEPV AFDYGTMTSG 240 QDNVDNFCWD DEMFDVDELL GVLDSTPLDT SAPNQVSGSV PVNQYAHDSS YRLQSAAYDN 300 NQFSNPSSQL QNTDDKDLQQ MQQLAPIVDD YNFDFLKPGR QEDFNFSLDD LSFLDFQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-17 | 72 | 140 | 5 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 17 | 22 | TRKRKS |
2 | 20 | 27 | RKSRSRKD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975517 | 1e-121 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. | |||
GenBank | HQ698902 | 1e-121 | HQ698902.1 Solanum lycopersicum DREB2 (DREB2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016461559.1 | 0.0 | PREDICTED: dehydration-responsive element-binding protein 2A-like | ||||
TrEMBL | A0A1S3ZB33 | 0.0 | A0A1S3ZB33_TOBAC; dehydration-responsive element-binding protein 2A-like | ||||
STRING | XP_009594350.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3701 | 24 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05410.1 | 2e-41 | DRE-binding protein 2A |